View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19444_low_7 (Length: 573)
Name: NF19444_low_7
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 44169142 - 44169698
Alignment:
| Q |
1 |
attatacaattttcattaaaacgtggataatcgccaccctctctcccttcttactagtaaatagtatattttttcatcggtgatttatgacaagacaacg |
100 |
Q |
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| T |
44169142 |
attatacaattttcattaaaacgtggataatcaccaccctctctcccttcttactagtaaatagtatattttttcatcggtgatttatgacaagacaaca |
44169241 |
T |
|
| Q |
101 |
tgctaatgtctttcattggaattaatttgagatcaatgctggccaacttttcnnnnnnntgcatgagaagtgtttgattgagaaagatgaaatgtaggaa |
200 |
Q |
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| T |
44169242 |
tgctaatgtctttcattggaattaatttgagatcaatgctggccaacttttcaaaaaaatgcatgagaagtgtttgattgagaaacatgaaatgtaggaa |
44169341 |
T |
|
| Q |
201 |
ccttaataaaattataaaagggacattgggtcacgggaagagacataaatatatcatcgtattaaactttaaacaattatataagtagaattgaacatta |
300 |
Q |
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|||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |
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| T |
44169342 |
ccttaataaaattataaaagggacgttgggtcatggagagagacataaatatatcatcgcattaaactttaaacaattatacaagtaaaattgaacatta |
44169441 |
T |
|
| Q |
301 |
cattttcatctaaaactctaagtattaaatatgggannnnnnnatca-cttatatactattcaatatttaatttcgattcaatgtgagacttttaatcat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44169442 |
cattttcatctaaaactctaagtattaaatatgggatcttcttcttatcaaatatactattcaatatttaatttcgattcaatgcgagacttttaatcat |
44169541 |
T |
|
| Q |
400 |
atttgatataacaacaaaagctcgagtaggttgatgtttaagtaaggcatacgtatctttctcaattaaataaagttgggtctccacagtagttgagctg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44169542 |
atttgatataacaacaaaagctcgagtaggttgatgtttaagtaaggcatacgtatctttctcaattaaataaagttgggtctccacagtagttcagctg |
44169641 |
T |
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| Q |
500 |
ttgcaattacaaaggagggaccgagctagctcgtctcatttgaaaacaccacacaaa |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44169642 |
ttgcaattacaaaggagggaccgagctagctcgtctcatttgaaaacatcacacaaa |
44169698 |
T |
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