View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19444_low_8 (Length: 570)
Name: NF19444_low_8
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 178 - 558
Target Start/End: Complemental strand, 25881310 - 25880939
Alignment:
| Q |
178 |
ttgaatatgaggatgaggattgagaaagtgaagtaggtttgtatttatttatgaagagaaatatcaatactatagggaagatgagattttaatttggtgg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25881310 |
ttgaatatgaggatgaggattgagaaagtgaagtaggtttgtatttatttatgaagagaaatatcaatactatggggaagatgagattttaatttggtgg |
25881211 |
T |
|
| Q |
278 |
ggtccatttggcgccaaaaagatgattgattttgttaatgaaaagagtggagtgaaagagaagtaacatgatattgtaataatgtctgtatttggataca |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25881210 |
ggtccatttggcgccaaaaagatgattgattttgttaatgaaaagagtggagtgaaagagaagtaacatgatattgtaataatgtctgtatttggataca |
25881111 |
T |
|
| Q |
378 |
atacaacatgaaattggatcaatggatttggaaattatgttgagtttctaatgttgaaatgattgtttatgattgtgctcaacagtgaagtta-gttata |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
25881110 |
atacaacatgaaattggatcaatggatttggaaattatgttgagtttctaatgttgaaatga----------ttgtgctcaacagtgaagttaggttata |
25881021 |
T |
|
| Q |
477 |
acatgatcattttagaagtgaagagtgttcggtcggattctttattttgactaaattgtttgtgaatggtacttgagtgatg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25881020 |
acatgatcattttagaagtgaagagtgttcggtcggattctttattttgactaaattgtttgtgaatggtacttgagtgatg |
25880939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 25881399 - 25881313
Alignment:
| Q |
74 |
taatttgcatttagaatttgaagtacgacgccgttttgggtt----------gagttaagtacggtacggtgagttcagttgagttc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25881399 |
taatttgcatttagaatttgaagtacgacgccgttttgggttgtgttggttagagttaagtacggtacggtgagttcagttgagttc |
25881313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University