View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19444_low_9 (Length: 565)
Name: NF19444_low_9
Description: NF19444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19444_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 9112066 - 9112623
Alignment:
| Q |
1 |
accacatgaagaatatatgttaattaagcaatttataaacaattttgcttggattgaactacaagagtgatctggactccttgatatgtctatcatcnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9112066 |
accacatgaagaatatatgttaattaagcaatttataaacaattttgcttggattgaactacaagaatgatctggactccttgatatgtctatcatcaaa |
9112165 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnnnnttattattttcttacgaggatcaaccataatatttacacatacacacatatgtaccatatacttgaattata----tacata |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9112166 |
aaggaaaaacaaaacaaattattattttcttacgaggatcaaccataatatatacacatacacacatatgtaccatatacttgaattatatatatacata |
9112265 |
T |
|
| Q |
197 |
taatttgaattcttgatagctgctgcagaggatgcaaactatatggcacttaccgtgaggttgcgcgcacggagtcttgccgcagccttgatagcagcaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9112266 |
taatttgaattcttgatagctgctgcagaggatgcaaactatatggcacttaccgtgagattgcgcgcacggagtcttgccgcagccttgatagcagcaa |
9112365 |
T |
|
| Q |
297 |
ggagatgatcctcttccacaattcgcttttgcctccaaaacttggcaatttcgcgttttgtcacactctcttctgctcttggcttcgagatgattctgaa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9112366 |
ggagatgatcctcttccacaattcgcttttgcctccaaaacttggcaatttcgcgttttgtcacgctctcttctgctcttggcttcgagatgattcggaa |
9112465 |
T |
|
| Q |
397 |
ttttggaagcggaggaggaggtggtggtgttgctgcccttgaaatagtcccttgttccttcctttgcttcatttcgacaaactttttcacttttttcact |
496 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9112466 |
ttttggaagcggaggaggtggtggtggtgttgctgcccttgaaatagtcccttgttccttcctttgcttcatttcgacaaacttttgagcttttttcact |
9112565 |
T |
|
| Q |
497 |
ttgtcactgctcactaaacttctaagctatatctaaaataaatttgagattactgatg |
554 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9112566 |
ttgtcactactcactaaacttctaagctatatctaaaataaatttgagattacggatg |
9112623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University