View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_high_14 (Length: 510)
Name: NF19445_high_14
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_high_14 |
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| [»] scaffold0061 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 234 - 501
Target Start/End: Complemental strand, 27273643 - 27273373
Alignment:
| Q |
234 |
atacaagcgtttatttacttaggttagacataacaagcagagcataacatggctttgagagaattaggatttgaattcaaggtgttttgactagatttaa |
333 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27273643 |
atacaagcgtttatttatttaggttagacataacaagtagagcataacatggctttgagagaattaggatttgaattcaaggtgttttgactagatttaa |
27273544 |
T |
|
| Q |
334 |
tttgattcttgcaattttcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatcga---cgaagtagagttctttgtattttagttt |
430 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
27273543 |
tttgattattgcaattctcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatcaacatcgaagtagagttctttgtattttagttt |
27273444 |
T |
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| Q |
431 |
cagttaacaacatggcgtcgaactctataatgatataccgatgtaactctttttctttgctttcttcttct |
501 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27273443 |
tagttaacaacatgacgtcgcactctataatgatataccgatgtaattctttttctttgctttcttcttct |
27273373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 27273859 - 27273732
Alignment:
| Q |
18 |
acttatctatctgactatcttccaattttcagttttctgtttggcaaggaattaaaagagggttcaaattggagaacatgaaaatgtggtaaatggttag |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27273859 |
acttatctatctgactatcttccatttttcagttttctgtttggaaaggaattaagagagggttcaaattggagaacatgaaactgtggtaaatggttag |
27273760 |
T |
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| Q |
118 |
tgatttacgtcattacttcaaactgtat |
145 |
Q |
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| T |
27273759 |
tgatttacgtcattacttcaaactgtat |
27273732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 234 - 488
Target Start/End: Complemental strand, 547 - 290
Alignment:
| Q |
234 |
atacaagcgtttatttacttaggttagacataacaagcagagcataacatggctttgagagaattaggatttgaattcaaggtgttttgactagatttaa |
333 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
547 |
atacaagcgtttatttatttaggttagacataacaagtagagcataacatggctttgagagaattaggatttgaatataaggtgttttgactagatttaa |
448 |
T |
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| Q |
334 |
tttgattcttgcaattttcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatcga---cgaagtagagttctttgtattttagttt |
430 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
447 |
tttgattattgcaattttcaaatgtgaaacgtatgcttgctcccaacaactacaacgaataactattgacatccaagtagagttctttgtattttagttt |
348 |
T |
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| Q |
431 |
cagttaacaacatggcgtcgaactctataatgatataccgatgtaactctttttcttt |
488 |
Q |
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| T |
347 |
cagttaacaacatgacgtcgcactctataatgatataccgatgtaactctttttcttt |
290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 234 - 488
Target Start/End: Complemental strand, 6058 - 5801
Alignment:
| Q |
234 |
atacaagcgtttatttacttaggttagacataacaagcagagcataacatggctttgagagaattaggatttgaattcaaggtgttttgactagatttaa |
333 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6058 |
atacaagcgtttatttatttaggttagacataacaagtagagcataacatggctttgagagaattaggatttgaatataaggtgttttgactagatttaa |
5959 |
T |
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| Q |
334 |
tttgattcttgcaattttcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatcga---cgaagtagagttctttgtattttagttt |
430 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
5958 |
tttgattattgcaattttcaaatgtgaaacgtatgcttgctcccaacaactacaacgaataactattgacatccaagtagagttctttgtattttagttt |
5859 |
T |
|
| Q |
431 |
cagttaacaacatggcgtcgaactctataatgatataccgatgtaactctttttcttt |
488 |
Q |
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| T |
5858 |
cagttaacaacatgacgtcgcactctataatgatataccgatgtaactctttttcttt |
5801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 763 - 638
Alignment:
| Q |
20 |
ttatctatctgactatcttccaattttcagttttctgtttggcaaggaattaaaagagggttcaaattggagaacatgaaaatgtggtaaatggttagtg |
119 |
Q |
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|||||||||| ||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
763 |
ttatctatctaactatcttccatttttcagttttctttttgg-aaggaattaagagagggttcaaattggagaacatgaaacagtggtaaatggtttgtg |
665 |
T |
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| Q |
120 |
atttacgtcattacttcaaactgtatg |
146 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
664 |
atttacgtctttacttcaaactgtatg |
638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 6274 - 6149
Alignment:
| Q |
20 |
ttatctatctgactatcttccaattttcagttttctgtttggcaaggaattaaaagagggttcaaattggagaacatgaaaatgtggtaaatggttagtg |
119 |
Q |
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|||||||||| ||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
6274 |
ttatctatctaactatcttccatttttcagttttctttttgg-aaggaattaagagagggttcaaattggagaacatgaaacagtggtaaatggtttgtg |
6176 |
T |
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| Q |
120 |
atttacgtcattacttcaaactgtatg |
146 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
6175 |
atttacgtctttacttcaaactgtatg |
6149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 272 - 501
Target Start/End: Complemental strand, 13550860 - 13550625
Alignment:
| Q |
272 |
agagcataacatg---gctttgagagaattaggatttgaattcaaggtgttttgactagatttaatttgattcttgcaattttcaaatgtgtaacgtatg |
368 |
Q |
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||||||||||||| ||||||||||||||||||| |||||| |||||||||| || |||||||||||||| |||||||||||||||||||||| ||| |
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| T |
13550860 |
agagcataacatgcatgctttgagagaattaggatctgaattgaaggtgtttttacatgatttaatttgattattgcaattttcaaatgtgtaacagatg |
13550761 |
T |
|
| Q |
369 |
c-ttgctcccaacaactacaacgaataactatcgac---gaagtagagttctttgtattttagtttcagttaacaacatggcgtcgaactctataat--g |
462 |
Q |
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| T |
13550760 |
ctttgctcccaacaactacaa-gaataacgattgacattgaagcggagttcttcgtattttagtttcagttaacaacat-gagac-aattttaaatttag |
13550664 |
T |
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| Q |
463 |
atataccgatgtaactctttttctttgctttcttcttct |
501 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
13550663 |
atatacctatgtaactctttttctttgctttcttcttct |
13550625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 13551123 - 13551005
Alignment:
| Q |
20 |
ttatctatctgactatcttccaattttcagttttctgtttggcaaggaattaaaagagggttcaaattggagaacatgaaaatgtggtaaatggttagtg |
119 |
Q |
| |
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|||||||||| |||||||| || ||||||||||||| ||||| |||| || |||||||||||||| |||||||| |||||||||||||||||| |
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| T |
13551123 |
ttatctatctaactatcttacatttttcagttttctttttggaaagggat--------ggttcaaattggaggacatgaaactgtggtaaatggttagtg |
13551032 |
T |
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| Q |
120 |
atttacgtcattacttcaaactgtatg |
146 |
Q |
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|||||||||||||||| ||||| |||| |
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| T |
13551031 |
atttacgtcattactttaaactatatg |
13551005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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