View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_high_15 (Length: 477)
Name: NF19445_high_15
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 30227621 - 30227365
Alignment:
| Q |
17 |
agatcattgaaccattgaaacagcattttatgaagaatgtgagattgaaaacgcgattcattgtaatatcaagaattactgaaaacgcaaagaaaaacaa |
116 |
Q |
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| T |
30227621 |
agatcattgaaccattgaaacagcattttatgaagaatgtgagattgaaaacgcgattcattgtaatatcaagaattactgaaaacgcaaagaaaaacaa |
30227522 |
T |
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| Q |
117 |
tccgaaataccagtgctgcggagaagaatgttatggtgaatgatgttggcttctccggcgagaatgcagagacggttacggtggtccggcgagagacggt |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30227521 |
tccgaaataccagtgctgcggagaagaatggtatggtgaatgatgttggcttctccggcgagaatgcagagacggttacggtggtccggcgagagacggt |
30227422 |
T |
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| Q |
217 |
tacggtggtcggagaatggcgcggttagttgaagtgttggtgtttggagggaaatgg |
273 |
Q |
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| T |
30227421 |
tacggtggtcggagaatggcgcggttagttgaagtgttggtgtttggagggaaatgg |
30227365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 290 - 477
Target Start/End: Complemental strand, 10573960 - 10573778
Alignment:
| Q |
290 |
gacaagacacgtttaaggatatgatgattgattactcctcctaaataatgatgagtatctaacatgtttttacnnnnnnnnnaatgtttaatttaatata |
389 |
Q |
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| T |
10573960 |
gacaagacacgtttaaggatatcatgattgattactcct---aaataatgacgagtatctaacatgtttttactttttttt-aatgtttaatttaatata |
10573865 |
T |
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| Q |
390 |
atagattttgtcctaagtagctaactacgttaccgttttccgttaccctcccaaatcccaatatatatcaaaaaccctaatttctcaa |
477 |
Q |
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| T |
10573864 |
atagattttgtcctaa-tagctaactatgttaccgttttccgttactctcccaaatcccaatatatatcaaaaaccctaatttctcaa |
10573778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 34687236 - 34686983
Alignment:
| Q |
17 |
agatcattgaaccattgaaacagcattttatgaagaatgtgagattgaaaacgcgattcattgtaatatcaagaatt---------------actgaaaa |
101 |
Q |
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| T |
34687236 |
agatcattcaaccactgaaactacattttatgaagaatgtgagatcgaaaacgcgattcattgcaatatcaagaattgcacactgttatgttactgaaaa |
34687137 |
T |
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| Q |
102 |
cgcaaagaaaaacaatccgaaataccagtgctgcggagaagaatgttatggtgaatgatgttggcttctccggcgagaatgcagagacggttacggtggt |
201 |
Q |
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| T |
34687136 |
caca--gaaaaacaatcggaaataccagtgct-ctgagaagaatg------------atgttggcttcgccggcgagaatgcagagacagttacggtggt |
34687052 |
T |
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| Q |
202 |
ccggcgagagacggttacggtggtcggagaatggcgcggttagttgaagtgttggtgtttggagggaaa |
270 |
Q |
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| T |
34687051 |
ccggcgagggacggttacggtggtcggagaatggcgcggttagttgaaatgttggtgtttggagggaaa |
34686983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 26985044 - 26984928
Alignment:
| Q |
154 |
gaatgatgttggcttctccggcgagaatgcagagacggttacggtggtccggcgagagacggttacggtggtcggagaatggcgcggttagttgaagtgt |
253 |
Q |
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| T |
26985044 |
gaatgatgttggcttctccggcgagaatgcagagacagttacggtggtccggcgagggacggttacggtggtcggagaatggcgcggttagttgaattgt |
26984945 |
T |
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| Q |
254 |
tggtgtttggagggaaa |
270 |
Q |
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| T |
26984944 |
tggtgtttggagggaaa |
26984928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 27024999 - 27024793
Alignment:
| Q |
17 |
agatcattgaaccattgaaacagcattttatgaagaatgtgagattgaaaacgcgattcattgtaatatcaagaa----------ttactgaaaacgcaa |
106 |
Q |
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| T |
27024999 |
agatcattcaaccattgaaactgcattttatgaagaatgtgggattgaaaacgcgattcattgcaatatcaagaattgcacacagttactgatcacgcaa |
27024900 |
T |
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| Q |
107 |
agaaaaacaatccgaaataccagtgctgcggagaagaatgttatggtgaatgatgttggcttctccggcgagaatgcagagacggttacggtggtccggc |
206 |
Q |
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| T |
27024899 |
agaaaaacaatcggaaataccagtgct-ctgagaa------------gaatgatgttggcttctccggcgagaatggagagacagttacggtggtccggt |
27024813 |
T |
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| Q |
207 |
gagagacggttacggtggtc |
226 |
Q |
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||| |||||||||||||||| |
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| T |
27024812 |
gagggacggttacggtggtc |
27024793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 27080267 - 27080439
Alignment:
| Q |
27 |
accattgaaacagcattttatgaagaatgtgagattgaaaacgcgattcattgtaatatcaagaat----------tactgaaaacgcaaag-aaaaaca |
115 |
Q |
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| T |
27080267 |
accattgaaacaacattttatcaagaatgtgagattgaaaacgtgattcattgtaatatcaagaattgcacactggtactgaaaacacagagaaaaaaaa |
27080366 |
T |
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| Q |
116 |
atccgaaataccagtgctgcggagaagaatgttatggtgaatgatgttggcttctccggcgagaatgcagaga |
188 |
Q |
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||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
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| T |
27080367 |
atcggaaataccagtgcaccggagaagaatggtatggtgaatgatgttggcttctccgacaagaatgcagaga |
27080439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 27024808 - 27024726
Alignment:
| Q |
187 |
gacggttacggtggtccggcgagagacggttacggtggtcggagaatggcgcggttagttgaagtgttggtgtttggagggaaa |
270 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
27024808 |
gacggttacggtggtccggtgagggacggttacggtggtcggagaataacgcggttagttgaagtgttgatg-ttggagggaaa |
27024726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 26985185 - 26985113
Alignment:
| Q |
17 |
agatcattgaaccattgaaacagcattttatgaagaatgtgagattgaaaacgcgattcattgtaatatcaag |
89 |
Q |
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|||||||| ||||| |||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||| |
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| T |
26985185 |
agatcattcaaccactgaaactgcattttatgaagaatgtgagatcgaaaacgcaattcattgcaatatcaag |
26985113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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