View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19445_high_2 (Length: 760)

Name: NF19445_high_2

Description: NF19445

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19445_high_2

[»] chr4 (3 HSPs)

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 3)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 54; E-Value: 1e-21

Query Start/End: Original strand, 102 - 202

Target Start/End: Complemental strand, 6275528 - 6275434

Alignment:

Q	102	atcaaatctgaagactttaatattcaaaagacttgaactaattcaagaatggttttagctagataatcaatccaacagttcgaagatgcagatttcaaac	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6275528	atcaaatctgaatactttaattttcaa------tgaaccaattcaaaaatggttttagctagataatcaatccaacagctcaaagatgcagatttcaaac	6275435	T

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Target: chr4; HSP #2

Raw Score: 46; E-Value: 8e-17

Query Start/End: Original strand, 13 - 74

Target Start/End: Complemental strand, 6275606 - 6275545

Alignment:

Q	13	aacctgtggaacttgccggctttagagtgttgaaaataaaaagctttcaatattttaaaatg	74	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	6275606	aacctgtagaacttgccggctttagagtgttgaaaatagaaagctttcaataggttaaaatg	6275545	T

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Target: chr4; HSP #3

Raw Score: 42; E-Value: 0.00000000000002

Query Start/End: Original strand, 699 - 760

Target Start/End: Complemental strand, 6274968 - 6274907

Alignment:

Q	699	gtttttaccttgttaatcaatcattaccgttcaatgatcattagaaaagatcgattttcctc	760	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6274968	gtttttacgttgttaaccaatcatttctgttcgatgatcattagaaaagatcgattttcctc	6274907	T

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