View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_high_20 (Length: 452)
Name: NF19445_high_20
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 39004033 - 39004454
Alignment:
| Q |
13 |
aatattagattggctgaatgaacgagacttaaattccttaaataagattttgactacaaggtttgttaacgnnnnnnntatagttggaaggagagacttt |
112 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
39004033 |
aatattagattggctgaatgaaccagacttgaattccttaaataaggttttgactacaaggtttgttaacgaaaaaaatatggttggaaggagagacttc |
39004132 |
T |
|
| Q |
113 |
gtggaaggtggccaaccaaattctccagaccattcataaaaacaaagatcttgtgcaacattaattctattatttcttatcacaaaatttatccttgaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39004133 |
gtggaaggtggccaaccaaattctccagaccattcataaaaacaaagatcttgtgcaacattaattctattatttcttatcacaaaatttatccttgaat |
39004232 |
T |
|
| Q |
213 |
atccagttacatataacatgggaacatcatttggacccatcaacaaaaaattacaagaaaactgaaagaaagtagtagagtttggaatacatttgttcaa |
312 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39004233 |
atccagttacatataacataggaacatcatttggacccatcaacaaaaaattactagaaaactgaaagaaagtagtagagtttggaatacatttgttcaa |
39004332 |
T |
|
| Q |
313 |
aaggctgaaccatgaaatcaaatgtcacaggatgtgaatcaaacatcaaacatgaatactgattaaaggaaaatacatgatctgttcttctttcnnnnnn |
412 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39004333 |
aaggctgaaccatgaaatcaaatgtcaaaggatgtgaatcaaacatcaaacatgaatactgattaaaggaaaatacatgatctgttcttctttctttttt |
39004432 |
T |
|
| Q |
413 |
ncttttgcttgggaggctgcaa |
434 |
Q |
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||||||||| ||||||||||| |
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| T |
39004433 |
tcttttgcttaggaggctgcaa |
39004454 |
T |
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