View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19445_high_24 (Length: 422)
Name: NF19445_high_24
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 10448453 - 10448074
Alignment:
| Q |
11 |
cagagacataatcaacaaagatgaactgatcaacactgaaaactcttcaagataagatattcttctcatgttgtaacagtcaaaccccaaaataacctcg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10448453 |
cagagacataatcaacaaagatgaactgatcaacactgaaaactcttcaagataagatattcttctcatgttgtaacagtcaaaccccaaaataacctca |
10448354 |
T |
|
| Q |
111 |
gtaatttattcacagtgttataaacacactgaaatacaagtttataatcttcaatactaacacatgccaaaaactaataaataaataaataaggttgtta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10448353 |
gtaatttattcacagtgttataaacacactgaaatacaagtttataatcttcaatactaacacatgccaaaaacaaataaataaataaataaggttgtta |
10448254 |
T |
|
| Q |
211 |
actacttacaacttgtaaaagggaacatttttatgtaacttcaaaaataagttaagtgattctaactgaatagcaccaacagaaaaagcatccttatctg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10448253 |
actacttacaacttgtaaaagggaacatttttatgtaacttcaaaaataagttaagtgattctaactgaatagcactaacagaaaaagcatccttatctg |
10448154 |
T |
|
| Q |
311 |
tttttggtgaatggtgaagggccaatttcattgaaaattaaagggctcttacaaattgaatgatagtagcacactagcac |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10448153 |
tttttggtgaatggtgaagggccaatttcattgaaaattaaagggctcttacaaattgaatgatagtagcacactagcac |
10448074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University