View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_high_25 (Length: 415)
Name: NF19445_high_25
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 105 - 400
Target Start/End: Original strand, 17142290 - 17142585
Alignment:
| Q |
105 |
aaaaggaggatgagtgatgagttaattagaagatgagaaatgttacaataattgagagtcactttacattgcacttgatttgaccacacagtcaccaaac |
204 |
Q |
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| T |
17142290 |
aaaaggaggatgagtgatgagttaattagaagatgagaaatgttacaataattgagagtcactttacattgcacttgatttgaccacacagtcaccaaac |
17142389 |
T |
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| Q |
205 |
agatattcttaagataattcttgtcattttattatatcaagttaatacatcatactattgaaagacttttagtgactgaatgacacaggttgttattcca |
304 |
Q |
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| T |
17142390 |
agatattcttaagataattcttgtcattttattatatcaagttaatacatcatactattgaaagacttttagtgactgaatgacacaggttgttattcca |
17142489 |
T |
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| Q |
305 |
tgtgatgtttgttttgtgttttggtgtgaaaatgaaggatgattatcatacttggacccctttaggggtctatttataaccatcaaatttgattgt |
400 |
Q |
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| T |
17142490 |
tgtgatgtttgttttgtgttttggtgtgaaaatgaaggatgattatcatacatggacccctttaggggtctatttataaccatcaaatttgattgt |
17142585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 17142196 - 17142252
Alignment:
| Q |
11 |
caaagggtgattgaagcccacaagaggctaaaagagatagcatgtgggccatttatg |
67 |
Q |
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| T |
17142196 |
caaagggtgattgaagcccacaagaggctaaaagagatagcatgtgggccatttatg |
17142252 |
T |
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