View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19445_high_3 (Length: 752)

Name: NF19445_high_3
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19445_high_3
NF19445_high_3
[»] chr3 (2 HSPs)
chr3 (136-732)||(29197470-29198064)
chr3 (17-84)||(29197351-29197418)
[»] chr8 (10 HSPs)
chr8 (258-687)||(12270868-12271297)
chr8 (217-732)||(12287495-12288008)
chr8 (249-687)||(12266946-12267387)
chr8 (249-687)||(12282672-12283113)
chr8 (285-687)||(12256891-12257293)
chr8 (285-687)||(12264283-12264685)
chr8 (15-79)||(12287209-12287273)
chr8 (148-210)||(12266776-12266839)
chr8 (148-212)||(12282502-12282567)
chr8 (146-212)||(12287357-12287424)


Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 136 - 732
Target Start/End: Original strand, 29197470 - 29198064
Alignment:
136 ttacactctttctttctttccctctttctcaccactttccatatcaaaacccaaaacttaagcttaatatatattcattctttaaagtactaacacacat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
29197470 ttacactctttctttctttccctctttctcaccactttccatatcaaaacccaaaacttaagcttaatatatattcattctttaaagtac--acacacat 29197567  T
236 tcttgtgcacaacaacatcaaattttctactatgggtatagcttcacgcacattagaaataatggttatatccggtgaaaatattcatgtaactgaggat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||||||||||    
29197568 tcttgtgcacaacaacatcaaattttctactatgggtatagcttcacgcacattagaaataacagttataaccggtgaaaatattcatataactgaggat 29197667  T
336 gcatacgttgtcgttcgaagtgagtctcttaaatgttacacaacgaaaacattgaaagataatgacgattgtggaaaaaactcgagttttctttcatgga 435  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||    
29197668 gcatacgttgtcgttcgaggtgagtctcttaattgttacacaacgaaaacagtgaaaaataaagacgattgtggaaaaaactcgagttttctttcatgga 29197767  T
436 atgaaaagtttttgttgaacatgccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcacg 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
29197768 atgaaaagtttttgttgaacatgccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtgacacg 29197867  T
536 aatcgccgtttcggatattctaaacggggctgaattggaaaattgttcccggattttgagttataaattgaggaactgggaagggaggcaaaatggagtt 635  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29197868 aatcgccgttttggatattctaaacggggctgaattggaaaattgttcccggattttgagttataaattgaggaactgggaagggaggcaaaatggagtt 29197967  T
636 attcattttggtgtgagggtggttatgccggagaaaagatcggttaccgtggtgaaaaataaaacaacggcagataaaaagagttatggtgatcggt 732  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29197968 attcattttggtgtgagggtggttatgccggagaaaagatcggttaccgtggtgaaaaataaaacaacggcagataaaaagagttatggtgatcggt 29198064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 29197351 - 29197418
Alignment:
17 tatcaaccaaacagcgtattagcggatatatccacggaattctcctgtgctgcaagtaatacacttat 84  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
29197351 tatcaaccaaacagcgtattagcggatatatccacggaattgtcttgtgctgcaagtaatacacttat 29197418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 258 - 687
Target Start/End: Original strand, 12270868 - 12271297
Alignment:
258 ttttctactatgggtatagcttcacgcacattagaaataatggttatatccggtgaaaatattcatgtaactgaggatgcatacgttgtcgttcgaagtg 357  Q
    |||||||| |||| | | |||||||  ||||||||||| | | ||||||| || ||||||||||||||||| ||||||||||||||||| |||||| |||    
12270868 ttttctaccatggttgtggcttcacaaacattagaaattacgattatatctggagaaaatattcatgtaacagaggatgcatacgttgttgttcgaggtg 12270967  T
358 agtctcttaaatgttacacaacgaaaacattgaaagataatgacgattgtggaaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacat 457  Q
    |||||||||| |||||||||||||||||  |||||||||||||  ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
12270968 agtctcttaattgttacacaacgaaaacggtgaaagataatgataattgtgggaaaaactcaagttttctttcatggaatgagaagtttttgttgaacat 12271067  T
458 gccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcacgaatcgccgtttcggatattcta 557  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
12271068 gccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcaagaatcgccgtttcggatattcta 12271167  T
558 aacggggctgaattggaaaattgttcccggattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcattttggtgtgagggtgg 657  Q
    ||||||| ||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
12271168 aacggggatgaatcggaaaattgttcacgaattttgagttataaattgaggaattgggaagggaggcaaaatggagttattcattttggtgtgagggtgg 12271267  T
658 ttatgccggagaaaagatcggttaccgtgg 687  Q
    || |||| ||| ||||| ||||||||||||    
12271268 ttgtgccagagcaaagaacggttaccgtgg 12271297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 217 - 732
Target Start/End: Original strand, 12287495 - 12288008
Alignment:
217 ttaaagtactaacacacattcttgtgcacaacaacatcaaattttctactatgggtatagcttcacgcacattagaaataatggttatatccggtgaaaa 316  Q
    ||||||||||||||||||||  |||||||||||  || ||||| | ||| |||||| |||| ||||  ||||||||||||| |||||||||||| |||||    
12287495 ttaaagtactaacacacatt--tgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaa 12287592  T
317 tattcatgtaactgaggatgcatacgttgtcgttcgaagtgagtctcttaaatgttacacaacgaaaacattgaaagataatgacgattgtggaaaaaac 416  Q
    ||||||||||| |||||||||||| ||||| |||||| ||||||||||||| |||||||| ||||| ||| |||||||||| || |||||| | ||||||    
12287593 tattcatgtaattgaggatgcatatgttgttgttcgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatgattgtaggaaaaac 12287692  T
417 tcgagttttctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaagttcaaaagtgttc 516  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
12287693 tcgagttttctttcatggaatgagaagtttttattaaacatgccattgcatgcaaggtcaatcacgtttgaggtgcaatgcaagaagtttaaaagtgttc 12287792  T
517 gccctattggggtggcacgaatcgccgtttcggatattctaaacggggctgaattggaaaattgttcccggattttgagttataaattgaggaactggga 616  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||  | |||||    
12287793 gacctattggggtggcaagaatcgccgtttcggatattctaaacggggctgaatcggaaaattgttcacgaattttgagttataaattgagagattggga 12287892  T
617 agggaggcaaaatggagttattcattttggtgtgagggtggttatgccggagaaaagatcggttaccgtggtgaaaaataaaacaacggcagataaaaag 716  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||| ||| ||||||||||||| |||| | ||||  |||||  ||| |||   |||    
12287893 agggaggcaaaatggagttattcattttggtgtgaaggtggttgcgccagaggaaagatcggttacggtggcggaaaaggaaacactggcggatgggaag 12287992  T
717 agttatggtgatcggt 732  Q
    ||||||||||||||||    
12287993 agttatggtgatcggt 12288008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 249 - 687
Target Start/End: Original strand, 12266946 - 12267387
Alignment:
249 aacatcaaattttctactatgggtatagcttcacgcacattagaaataatggttatatccggtgaaaatattcatgtaactgaggatgcatacgttgtcg 348  Q
    ||||| ||||| |||||||||||| |||| ||||||||||||||||| | |||||||||||| ||||||||||||||||| || ||||||||||||||||    
12266946 aacattaaattctctactatgggtgtagcctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcg 12267045  T
349 ttcgaagtgagtctcttaaatgttacacaacgaaaacattgaaagataatgacgat---tgtggaaaaaactcgagttttctttcatggaatgaaaagtt 445  Q
    ||||| ||||||||||||| |||||||||||||| ||  ||||||||||  |||||   ||||||||||| |||||||| ||||||||||||||||||||    
12267046 ttcgaggtgagtctcttaattgttacacaacgaagacgctgaaagataacaacgataattgtggaaaaaattcgagtttcctttcatggaatgaaaagtt 12267145  T
446 tttgttgaacatgccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcacgaatcgccgtt 545  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| | ||||    
12267146 tttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattggcgtt 12267245  T
546 tcggatattctaaacggggctgaattggaaaattgttcccggattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcattttg 645  Q
    |||||| |||| || ||  | |    |||||||||||| |  ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||     
12267246 tcggattttcttaatggcaccgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggggttattcatttta 12267345  T
646 gtgtgagggtggttatgccggagaaaagatcggttaccgtgg 687  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
12267346 gtgtgagggtggttgtgccggaggaaagatcggttaccgtgg 12267387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 249 - 687
Target Start/End: Original strand, 12282672 - 12283113
Alignment:
249 aacatcaaattttctactatgggtatagcttcacgcacattagaaataatggttatatccggtgaaaatattcatgtaactgaggatgcatacgttgtcg 348  Q
    ||||| ||||| |||||||||||| |||| ||||||||||||||||| | |||||||||||| ||||||||||||||||| || ||||||||||||||||    
12282672 aacattaaattctctactatgggtgtagcctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcg 12282771  T
349 ttcgaagtgagtctcttaaatgttacacaacgaaaacattgaaagataatgacgat---tgtggaaaaaactcgagttttctttcatggaatgaaaagtt 445  Q
    ||||| ||||||||||||| |||||||||||||| ||  ||||||||||  |||||   ||||||||||| |||||||| ||||||||||||||||||||    
12282772 ttcgaggtgagtctcttaattgttacacaacgaagacgctgaaagataacaacgataattgtggaaaaaattcgagtttcctttcatggaatgaaaagtt 12282871  T
446 tttgttgaacatgccattgcatgcaaggtcaatcacatttgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcacgaatcgccgtt 545  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| | ||||    
12282872 tttgttgaacatgccattgcatgcaaggtcaattacgtttgaggtgcaatgcaagaagtttaaaagtgttcgtcctattggggtagcaagaattggcgtt 12282971  T
546 tcggatattctaaacggggctgaattggaaaattgttcccggattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcattttg 645  Q
    |||||| |||| || || || |    |||||||||||| |  ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||      
12282972 tcggattttctcaatggcgccgtgccggaaaattgttcgcaaattttgagttataaattgagggattgggaagggaggcaaaatggagttattcatttca 12283071  T
646 gtgtgagggtggttatgccggagaaaagatcggttaccgtgg 687  Q
    |||||||||||||| |||||||| ||||||| ||||||||||    
12283072 gtgtgagggtggttgtgccggaggaaagatcagttaccgtgg 12283113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 285 - 687
Target Start/End: Original strand, 12256891 - 12257293
Alignment:
285 acattagaaataatggttatatccggtgaaaatattcatgtaactgaggatgcatacgttgtcgttcgaagtgagtctcttaaatgttacacaacgaaaa 384  Q
    ||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||    
12256891 acattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtgagtctcttaattgttacacaacaaaaa 12256990  T
385 cattgaaagataatgacgattgtggaaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaatcacatt 484  Q
    |  |||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
12256991 cggtgaaagataatgataattgtgggaaaaactcgagttttctttcatggaatgagaagtttttgttgaacatgccattgcatgcaaggtcaatcacttt 12257090  T
485 tgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcacgaatcgccgtttcggatattctaaacggggctgaattggaaaattgttcc 584  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||| |||| ||  |||||||| |||| || ||    |    |||||||||||      
12257091 tgaggtgcaatgcaagaagtttaaaagtgtacgtcctattggggtggcaagaattgctctttcggattttctcaatggcatcgcgccggaaaattgtttg 12257190  T
585 cggattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcattttggtgtgagggtggttatgccggagaaaagatcggttaccg 684  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||| ||||| |||||    
12257191 caaattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcatttcagtgtgagggtggttgtgccggagaaaacatcggctaccg 12257290  T
685 tgg 687  Q
    |||    
12257291 tgg 12257293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 285 - 687
Target Start/End: Original strand, 12264283 - 12264685
Alignment:
285 acattagaaataatggttatatccggtgaaaatattcatgtaactgaggatgcatacgttgtcgttcgaagtgagtctcttaaatgttacacaacgaaaa 384  Q
    ||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||    
12264283 acattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtgagtctcttaattgttacacaacaaaaa 12264382  T
385 cattgaaagataatgacgattgtggaaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattgcatgcaaggtcaatcacatt 484  Q
    |  |||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
12264383 cggtgaaagataatgataattgtgggaaaaactcgagttttctttcatggaatgagaagtttttgttgaacatgccattgcatgcaaggtcaatcacttt 12264482  T
485 tgaggtgcaatgcaagaagttcaaaagtgttcgccctattggggtggcacgaatcgccgtttcggatattctaaacggggctgaattggaaaattgttcc 584  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||| |||| ||  |||||||| |||| || ||    |    |||||||||||      
12264483 tgaggtgcaatgcaagaagtttaaaagtgtacgtcctattggggtggcaagaattgctctttcggattttctcaatggcatcgcgccggaaaattgtttg 12264582  T
585 cggattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcattttggtgtgagggtggttatgccggagaaaagatcggttaccg 684  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||| ||||| |||||    
12264583 caaattttgagttataaattgaggaactgggaagggaggcaaaatggagttattcatttcagtgtgagggtggttgtgccggagaaaacatcggctaccg 12264682  T
685 tgg 687  Q
    |||    
12264683 tgg 12264685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 12287209 - 12287273
Alignment:
15 aatatcaaccaaacagcgtattagcggatatatccacggaattctcctgtgctgcaagtaataca 79  Q
    |||||||||||||||||||||||||||||||||||| |||||| |  |||||||||||| |||||    
12287209 aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttataca 12287273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 12266776 - 12266839
Alignment:
148 tttctttccctctttctcaccactttccatatcaaaa-cccaaaacttaagcttaatatatatt 210  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||    
12266776 tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaagcttattatatatt 12266839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 12282502 - 12282567
Alignment:
148 tttctttccctctttctcaccactttccatatcaaaa-cccaaaacttaagcttaatatatattca 212  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||| ||||| |||| ||||||||||    
12282502 tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaaccttattatatattca 12282567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 12287357 - 12287424
Alignment:
146 tctttctttccctctttctcaccactttccatatcaaaa-cccaaaacttaagcttaatatatattca 212  Q
    ||||||||||||||||||||  ||||||||| ||||||| | | ||||||||||||| ||||||||||    
12287357 tctttctttccctctttctcgtcactttccaaatcaaaatctctaaacttaagcttattatatattca 12287424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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