View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_high_31 (Length: 370)
Name: NF19445_high_31
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 45637535 - 45637861
Alignment:
| Q |
21 |
tgctgcagcagcgcagagcagcaacaacattcctgcagttgcaatcagcagcagtggtatgtcagcagaagctaatggcggtaaacctttacgtgtggca |
120 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||| |
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| T |
45637535 |
tgctgcagcagtgcagagcagcaacaacattcctgcagttgcaatcagcagcagtggtatgtcagcagaagctaatggcagcagacctttacgtgcggca |
45637634 |
T |
|
| Q |
121 |
gcgaataacaacaacaacaactctggtatgaacagtcgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttatggttcatcctctttgtcatggc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45637635 |
gcgaataacaacaacaacaactctggtatgaacagtcgtaatgtgc----------agcagctgtgcgtgttgtttatggttcatcctctttgtcatggc |
45637724 |
T |
|
| Q |
221 |
agaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaaggggg |
320 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
45637725 |
agaggcctaaccaaggtagattcaagtgtaacattgatgtcgcattttcaaatgagctgaacatcacaggtttgggcatgtgcatccgcgatgaaggggg |
45637824 |
T |
|
| Q |
321 |
agttttcgtgcttgcaaaggctattccttcacaggtt |
357 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
45637825 |
agttttcgtgcttgcaaaggctattcctttacaggtt |
45637861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 8274148 - 8274484
Alignment:
| Q |
21 |
tgctgcagcagcgcagagcagcaacaacattcctgcagttgcaatcagcagcagtggtatgtcagcagaagctaatggcggtaaacctttacgtgtggca |
120 |
Q |
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||||||||||||||| |||||||||| |||| ||||| |||||||||||||||| ||||||||||||| |||| ||||| | | |||| ||||| |||| |
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| T |
8274148 |
tgctgcagcagcgcatagcagcaacagcatttctgcaattgcaatcagcagcagcggtatgtcagcagcagctgatggcagcagtccttcacgtgcggca |
8274247 |
T |
|
| Q |
121 |
gcgaataacaacaacaacaactctggtatgaacagtcgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttatggttcatcctctttgtcatggc |
220 |
Q |
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|||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||| |
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| T |
8274248 |
gcgaataacaacaacaccaactgtgatatgaacagacgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttctggttcgtccttcttgacatggc |
8274347 |
T |
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| Q |
221 |
agaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaaggggg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
8274348 |
agaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttctaatgagctgaacatcacaggtttgggcatgtgcatccacgatgaaggggg |
8274447 |
T |
|
| Q |
321 |
agttttcgtgcttgcaaaggctattccttcacaggtt |
357 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
8274448 |
tgttttcgtgcttgcaaaggctattcctttacaggtt |
8274484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 22785547 - 22785660
Alignment:
| Q |
234 |
aggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaagggggagttttcgtgctt |
333 |
Q |
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||||||||||||||| ||||| |||||||| |||| ||| | | ||| ||| | |||| |||||||| ||||||||||||||||||||||| | |||| |
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| T |
22785547 |
aggtagattcaagtgcaacattgatgccgcttttttaaacaaacagaatgtcatatgtttgggcatgtgtatctgcgatgaagggggagtttttgggctt |
22785646 |
T |
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| Q |
334 |
gcaaaggctattcc |
347 |
Q |
| |
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|| |||| |||||| |
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| T |
22785647 |
gctaaggttattcc |
22785660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 118 - 357
Target Start/End: Original strand, 41343783 - 41344022
Alignment:
| Q |
118 |
gcagcgaataacaacaacaacaactctggtatgaacagtcgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttatggttcatcctctttgtcat |
217 |
Q |
| |
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||||||||||||||||||| ||| | || || ||||| ||||||| || |||| |||||||| ||||||| |||| |||||| ||| ||| | | |
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| T |
41343783 |
gcagcgaataacaacaacaccaattatgatacgaacatgcgtagtgcgctgccagatgcagcagttgtgcgtattgttcttggttcgtccgtcttgactt |
41343882 |
T |
|
| Q |
218 |
ggcagaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaagg |
317 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||| ||||| || ||| |||| ||||||||||| || ||||||||| |||||||||| |
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| T |
41343883 |
ggcagaggcctaaccaaggaagatttaagtgtaacatcgatgccgctttttctaaagagttgaatatcacaggtttgggtatgtgcatccgcgatgaagg |
41343982 |
T |
|
| Q |
318 |
gggagttttcgtgcttgcaaaggctattccttcacaggtt |
357 |
Q |
| |
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||| || |||||||| |||||||||||||||| ||||||| |
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| T |
41343983 |
gggtgtcttcgtgctcgcaaaggctattcctttacaggtt |
41344022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 207 - 347
Target Start/End: Complemental strand, 11152634 - 11152494
Alignment:
| Q |
207 |
ctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatc |
306 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||| |||||| |||| ||||||||||| |||||||| ||| |
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| T |
11152634 |
ctctttgtcatggcagaggcctcaccaaggtagagtcaagtgtaacgtcgatgccacattttcgaatgagttgaatatcacaggtttgggcatgtgtatc |
11152535 |
T |
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| Q |
307 |
tgcgatgaagggggagttttcgtgcttgcaaaggctattcc |
347 |
Q |
| |
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|||||||| ||||| |||| |||||||| ||||||||||| |
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| T |
11152534 |
cgcgatgaaaggggactttttgtgcttgctaaggctattcc |
11152494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 347
Target Start/End: Original strand, 8859288 - 8859428
Alignment:
| Q |
207 |
ctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatc |
306 |
Q |
| |
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||||| |||||||||||||||| |||||| |||| | |||||||| | |||||| ||||||| |||||| |||| ||||||||||| |||||||| ||| |
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| T |
8859288 |
ctcttcgtcatggcagaggcctcaccaagatagagttaagtgtaatgttgatgccacattttcgaatgagttgaatatcacaggtttgggcatgtgtatc |
8859387 |
T |
|
| Q |
307 |
tgcgatgaagggggagttttcgtgcttgcaaaggctattcc |
347 |
Q |
| |
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|||||||| ||||| |||| |||||||| ||||||||||| |
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| T |
8859388 |
cgcgatgaaaggggactttttgtgcttgctaaggctattcc |
8859428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 18684976 - 18684890
Alignment:
| Q |
234 |
aggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaaggggg |
320 |
Q |
| |
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||||||||||||||| ||||| | |||||| |||| ||||| ||| ||||| ||||| |||||||| ||| ||||||||||||| |
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| T |
18684976 |
aggtagattcaagtgaaacattggtgccgcttttttgaatgaatggaatatcaccggtttgggcatgtgtatccgcgatgaaggggg |
18684890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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