View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19445_high_5 (Length: 705)

Name: NF19445_high_5
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19445_high_5
NF19445_high_5
[»] chr7 (4 HSPs)
chr7 (130-689)||(1908851-1909412)
chr7 (1-56)||(1908721-1908776)
chr7 (241-318)||(8300408-8300485)
chr7 (603-666)||(8299923-8299986)
[»] chr4 (3 HSPs)
chr4 (604-687)||(5450314-5450397)
chr4 (231-350)||(4607539-4607661)
chr4 (627-677)||(4607956-4608006)
[»] chr3 (1 HSPs)
chr3 (603-680)||(21821866-21821944)
[»] chr2 (2 HSPs)
chr2 (603-677)||(14292675-14292748)
chr2 (611-680)||(20489071-20489140)
[»] scaffold0032 (1 HSPs)
scaffold0032 (611-679)||(25169-25236)


Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 130 - 689
Target Start/End: Original strand, 1908851 - 1909412
Alignment:
Q  130 gaatgaatgcaatacttcacaaagtatccaaggatttttagtgaaatcagttgaaatgattatgcaaatacacttacagagctgaacaataaggaagatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1908851 gaatgaatgcaatacttcacaaagtatccaaggatttttagtgaaatcagttgaaatgattatgcaaatacacttacagagctgaacaataaggaagatt 1908950  T
Q  230 atgatttttcatgaatataaaaccctgaaccttcatgatattgtgttccttcactgaggatataggagcaatcatttaaaatatggttttgttcaagtta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1908951 atgatttttcatgaatataaaaccctgaaccttcatgatattgtgttccttcacttaggatataggagcaatcatttaaaatatggttttgttcaagtta 1909050  T
Q  330 ggagagataaggaggtttgctagtatttcaaggaataaggtggaaatctgaaaatctcaaatactatcatgacaacctttgaaattnnnnnnnnnnnnnn 429  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||                  
T  1909051 ggagagataaggaggtttgctactatttcaagtaataaggtggaaatctgaaaatctcaaatactatcttgacaacctttgaaattgaaaagaaaaagaa 1909150  T
Q  430 nnnnnnnnnnntgaataatttgtattaattgtttatcacccaagggtatgtaaaaatcaaaagagaagatgtgttttgtgttaaaaagagaaatatatga 529  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1909151 aagagaaaaaatgaataatttgtattaattgtttatcacccaagggtatgtaaaaatcaaaagagaagatgtgttttgtgttaaaaagagaaatatatga 1909250  T
Q  530 atgctctggactaaggccactttgtttcaattgcctatatatgaca--nnnnnnnggtagcctagcaacaatacaaacccttaaaagacctcagtgatct 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  1909251 atgctctggactaaggccactttgtttcaattgcctatatatgacatttttttttggtagcctagcaacaatacaaacccttaaaagacctcagtgatct 1909350  T
Q  628 atgcttgaatattttcaaaatagtatgcttggatgaatgcataacttgatcaaaatgttatc 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1909351 atgcttgaatattttcaaaatagtatgcttggatgaatgcataacttgatcaaaatgttatc 1909412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1908721 - 1908776
Alignment:
Q  1 taaaattctcatatgtaacatatggcatcttgttcttaagtatgtataactaagta 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1908721 taaaattctcatatgtaacatatggcatcttgttcttaagtatgtataactaagta 1908776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 8300485 - 8300408
Alignment:
Q  241 tgaatataaaaccctgaaccttcatgatattgtgttccttcactgaggatataggagcaatcatttaaaatatggttt 318  Q
    ||||||||||||| ||||||||||| ||||||||| | ||  ||  ||||| ||||||||||||||||| ||||||||    
T  8300485 tgaatataaaaccatgaaccttcattatattgtgtactttgtcttgggataaaggagcaatcatttaaattatggttt 8300408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 603 - 666
Target Start/End: Complemental strand, 8299986 - 8299923
Alignment:
Q  603 aacccttaaaagacctcagtgatctatgcttgaatattttcaaaatagtatgcttggatgaatg 666  Q
    ||||||| |||| ||| ||||||||  ||||||| |||||||||||| ||||||||||||||||    
T  8299986 aaccctttaaaggccttagtgatcttagcttgaacattttcaaaataatatgcttggatgaatg 8299923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 604 - 687
Target Start/End: Original strand, 5450314 - 5450397
Alignment:
Q  604 acccttaaaagacctcagtgatctatgcttgaatattttcaaaatagtatgcttggatgaatgcataacttgatcaaaatgtta 687  Q
    |||||||||| | || |||||| ||||||||||||||||  |||| |||||||||||||||||||||| |||||||| ||||||    
T  5450314 acccttaaaatatcttagtgatatatgcttgaatatttttgaaatggtatgcttggatgaatgcataatttgatcaagatgtta 5450397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 350
Target Start/End: Original strand, 4607539 - 4607661
Alignment:
Q  231 tgatttttcatgaa--tataaaaccctgaaccttcatgatattgtgttccttcactgaggatataggagcaatcatttaaaatatggttttgttcaagtt 328  Q
    ||||||||||||||  ||||||||| | ||||||||  | ||||||| ||||  || |||||||||||| |||||||||| |||||||||||| ||||||    
T  4607539 tgatttttcatgaacatataaaaccataaaccttcacaaaattgtgtcccttgtcttaggatataggagaaatcatttaagatatggttttgtgcaagtt 4607638  T
Q  329 -aggagagataaggaggtttgct 350  Q
      ||| ||||||||||| |||||    
T  4607639 ggggaaagataaggaggcttgct 4607661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 627 - 677
Target Start/End: Original strand, 4607956 - 4608006
Alignment:
Q  627 tatgcttgaatattttcaaaatagtatgcttggatgaatgcataacttgat 677  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  4607956 tatgctttaatattttcaaagtagtatgtttggatgaatgcataacttgat 4608006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 603 - 680
Target Start/End: Original strand, 21821866 - 21821944
Alignment:
Q  603 aacccttaaaagacctcagtgatctatgcttgaatatttt-caaaatagtatgcttggatgaatgcataacttgatcaa 680  Q
    ||||||| ||||||||  ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||    
T  21821866 aacccttcaaagaccttggtgatctatgctttaatatttttcaaaattgtatgcttggatgaatgcataacttaatcaa 21821944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 677
Target Start/End: Complemental strand, 14292748 - 14292675
Alignment:
Q  603 aacccttaaaagacctcagtgatctatgcttgaatattttcaaaatagtatgcttggatgaatgcataacttgat 677  Q
    ||||||||||| |||| | ||||| |||||| |||| |||| || || || ||||||||||||||||||||||||    
T  14292748 aacccttaaaa-accttattgatccatgcttaaatactttcgaagtaataagcttggatgaatgcataacttgat 14292675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 680
Target Start/End: Complemental strand, 20489140 - 20489071
Alignment:
Q  611 aaagacctcagtgatctatgcttgaatattttcaaaatagtatgcttggatgaatgcataacttgatcaa 680  Q
    |||||||| | |||||||| ||| ||||||||| || || ||||||||||||| | || |||||||||||    
T  20489140 aaagaccttaatgatctatactttaatattttctaagtaatatgcttggatgatttcaaaacttgatcaa 20489071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 611 - 679
Target Start/End: Original strand, 25169 - 25236
Alignment:
Q  611 aaagacctcagtgatctatgcttgaatattttcaaaatagtatgcttggatgaatgcataacttgatca 679  Q
    |||||||| ||||||||||||||| ||  |||||||  | |||||||||||| |||| |||||||||||    
T  25169 aaagaccttagtgatctatgcttg-atgctttcaaatgaatatgcttggatgtatgcctaacttgatca 25236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University