View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19445_high_54 (Length: 259)
Name: NF19445_high_54
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 39473015 - 39473255
Alignment:
| Q |
5 |
gttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttg |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39473015 |
gttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttg |
39473114 |
T |
|
| Q |
105 |
gtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagtcgaaatttcgttggatta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39473115 |
gtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagttgaaatttcgttggatta |
39473214 |
T |
|
| Q |
205 |
tagggcggagtttaatggtgaacctaactatcttgtaactg |
245 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
39473215 |
tagggcggagtttaatggtgcgcctaactatcttgtaactg |
39473255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 39487451 - 39487690
Alignment:
| Q |
6 |
ttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttgg |
105 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
39487451 |
ttggatgggcccaacaggcccaaatactagctcatccagccactggaggatttgtttcgcattgtggttggaattcaacactcgagagcatatattttgg |
39487550 |
T |
|
| Q |
106 |
tgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagtcgaaatttcgttggattat |
205 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| || |||||| ||||||||||||||||||||||||| |||||||||| || |||||| | ||||||||| |
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| T |
39487551 |
tgtgcctattgccgcgtggccactctatgctgagcaacaggctaatgcttttgaattggtgtgtgaactgaaaataggtgtggaaattgctttggattat |
39487650 |
T |
|
| Q |
206 |
agggcggagtttaatggtgaacctaactatcttgtaactg |
245 |
Q |
| |
|
| || || |||||||| | ||||||||||||||||||| |
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|
| T |
39487651 |
aaggtggggtttaatgaagggcctaactatcttgtaactg |
39487690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 39476497 - 39476737
Alignment:
| Q |
5 |
gttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttg |
104 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
39476497 |
gttggatgggcccaacaggcccaaatactagcccacccagccataggaggatttgtttcacattgtggttggaattcaacactcgagagcatatattttg |
39476596 |
T |
|
| Q |
105 |
gtgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagtcgaaatttcgttggatta |
204 |
Q |
| |
|
|||| || || |||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||| |||| ||||| || || || | |||||||| |
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| T |
39476597 |
gtgtaccaattgccgcatggccactctttgctgaacaacaggctaatgcttttgaattggtgtgtgagctgaagataggtgtggatatcgcattggatta |
39476696 |
T |
|
| Q |
205 |
tagggcggagtttaatggtgaacctaactatcttgtaactg |
245 |
Q |
| |
|
||||| |||||| | |||| ||||||||||||||||||| |
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|
| T |
39476697 |
tagggtggagttaagtggtaggcctaactatcttgtaactg |
39476737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 39484252 - 39484487
Alignment:
| Q |
9 |
gatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttggtgt |
108 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
39484252 |
gatgggcccaacaagcccaaatactagcccacccagccataggaggatttgtttcacattatggttggaattcaacactcgagagcatatattttggtgt |
39484351 |
T |
|
| Q |
109 |
gcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaatag--gagtcgaaatttcgttggattata |
206 |
Q |
| |
|
|||||| |||||||||||||| | || ||||||||| |||||||||||||||||||||||||| || | |||| | || || ||| | |||||||||| |
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|
| T |
39484352 |
gcctattgccgcatggccactctttgttgaacaacaggctaatgcttttgaattggtgtgtgagctgcagataggtgtgtggagattgcattggattata |
39484451 |
T |
|
| Q |
207 |
gggcggagtttaatggtgaacctaactatcttgtaa |
242 |
Q |
| |
|
|| |||||||| |||||| ||||||||||||||| |
|
|
| T |
39484452 |
ggatggagtttagtggtgagtctaactatcttgtaa |
39484487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 39451986 - 39452218
Alignment:
| Q |
6 |
ttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttgg |
105 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| || |||||||| |||||||||| ||| |||||||| |||||||| |||||||||||| |||||||| |
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|
| T |
39451986 |
ttggttgggccccacaagcccaaatactagcacatccagccataggaggatttgtttcacattgtggctggaattccacactcgagagcatatattttgg |
39452085 |
T |
|
| Q |
106 |
tgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagtcgaaatttcgttggattat |
205 |
Q |
| |
|
|||||| || || ||||||| || | ||| || |||||| |||||||||||||||||||||||||||||| || || || ||| |||| |||||| |
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| T |
39452086 |
tgtgcccattgcaacatggccgctctttgctgagcaacaggttaatgcttttgaattggtgtgtgagttgaagatttccgtggagattgcgttagattat |
39452185 |
T |
|
| Q |
206 |
agggcggagtttaatggtgaacctaactatctt |
238 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||| |
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|
| T |
39452186 |
agggtggagtttaacagtggtcctaactatctt |
39452218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 39461259 - 39461478
Alignment:
| Q |
26 |
caaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttggtgtgcctatagccgcatggc |
125 |
Q |
| |
|
|||||| | ||||||||||||| |||||||| | ||| |||||||| ||||||||| ||||||||||||| |||||||||||||| || ||| | |||| |
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|
| T |
39461259 |
caaatattggcccacccagccacgggaggattcgtttcccattgtggctggaattcaatactcgagagcatgtattttggtgtgcccattgccacgtggc |
39461358 |
T |
|
| Q |
126 |
cactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagtcgaaatttcgttggattatagggcggagtttaatggtga |
225 |
Q |
| |
|
| || | ||| ||||||||||||||||||||| | |||||| |||| |||| || | || || ||| ||| |||||||| | |||||| |||||||| |
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|
| T |
39461359 |
cgctctttgctgaacaacagactaatgcttttcagttggtgcatgagctgaagatggctgtggagattgtgttagattatagagtggagttcaatggtga |
39461458 |
T |
|
| Q |
226 |
acctaactatcttgtaactg |
245 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
39461459 |
gcctaactatcttgtaactg |
39461478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 39455614 - 39455852
Alignment:
| Q |
6 |
ttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttgg |
105 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||| ||||||| |||| || ||||| |
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|
| T |
39455614 |
ttggttgggctccacaaacccaaatactagcccatccagccacaggaggatttgtttcacattgtggttggaattccacactcgagggcatatactttgg |
39455713 |
T |
|
| Q |
106 |
tgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagtcgaaatttcgttggattat |
205 |
Q |
| |
|
|||||| || || ||||||| || | ||| ||||||||| || |||||||||||||||||||||| |||| || | || || ||| || | |||||| |
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|
| T |
39455714 |
tgtgcccattgcaacatggccgctctttgctgaacaacaggttactgcttttgaattggtgtgtgagctgaagattgctgtggagattgcgctagattat |
39455813 |
T |
|
| Q |
206 |
agggcggagtttaatggtgaacctaactatcttgtaact |
244 |
Q |
| |
|
|||| ||||| || | ||| |||||||||||| ||||| |
|
|
| T |
39455814 |
agggtggagtatagtagtgggcctaactatcttttaact |
39455852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 39463744 - 39463500
Alignment:
| Q |
6 |
ttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttgg |
105 |
Q |
| |
|
|||| ||||| ||||| | |||||||||||||||||| |||| |||||||||| || |||||||| |||||||| ||| |||||||| |||||||| |
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|
| T |
39463744 |
ttggttgggctccacaggcccaaatactagcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttgg |
39463645 |
T |
|
| Q |
106 |
tgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagtcgaaatttcgttggattat |
205 |
Q |
| |
|
||| || | ||| | ||||| | | ||| ||||||||||| |||||||||||| ||||||||||||| || || | || || ||||| |||||||| |
|
|
| T |
39463644 |
tgttccacttgccacttggccgatctttgctgaacaacagacaaatgcttttgaactggtgtgtgagttaaagatggcggtggagatttcattggattac |
39463545 |
T |
|
| Q |
206 |
agggcggagtttaatggtgaacctaactatcttgtaactgatgat |
250 |
Q |
| |
|
|| | ||||||| ||| || ||||||||||||||||||| |||| |
|
|
| T |
39463544 |
agagtggagtttcttggcgagcctaactatcttgtaactgctgat |
39463500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 39457482 - 39457243
Alignment:
| Q |
6 |
ttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttgg |
105 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |||||||||| ||| |||||||| |||||||| |||||||| ||| |||||||| |
|
|
| T |
39457482 |
ttggatgggccccacagacgcacatactagcccacccagccacgggaggatttgtttctcattgtggctggaattccacactcgagaacatatattttgg |
39457383 |
T |
|
| Q |
106 |
tgtgcctatagccgcatggccactttatgcagaacaacagactaatgcttttgaattggtgtgtgagttgaaaataggagtcgaaatttcgttggattat |
205 |
Q |
| |
|
||||||| | ||| | ||||| || | ||| || || ||||| ||||| ||| ||||||| |||||| |||| || | || || ||| | || |||||| |
|
|
| T |
39457382 |
tgtgcctgttgccacgtggccgctctttgctgatcagcagacaaatgcatttcaattggtatgtgagctgaagatggctgtggagattgcattagattat |
39457283 |
T |
|
| Q |
206 |
agggcggagtttaatggtgaacctaactatcttgtaactg |
245 |
Q |
| |
|
||| ||||||||||| || ||||||||||| |||||| |
|
|
| T |
39457282 |
aggttagagtttaatggcgagtctaactatcttttaactg |
39457243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 43311722 - 43311566
Alignment:
| Q |
1 |
ggtcgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttat |
100 |
Q |
| |
|
|||| |||||||||| || || |||||| |||| || || ||||| | ||||| |||| ||| ||||||||||||||||| ||||||||||| ||| |
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|
| T |
43311722 |
ggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgtggttggaattcgactctcgagagcatatat |
43311623 |
T |
|
| Q |
101 |
tttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgctttt |
157 |
Q |
| |
|
| |||||||||||| ||| |||||||||| | ||| || ||||| || ||||||||| |
|
|
| T |
43311622 |
tatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgctttt |
43311566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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