View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_high_56 (Length: 255)
Name: NF19445_high_56
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_high_56 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 31320245 - 31320459
Alignment:
| Q |
20 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
119 |
Q |
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| T |
31320245 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
31320344 |
T |
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| Q |
120 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
219 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
31320345 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
31320444 |
T |
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| Q |
220 |
acaggatgcaaagct |
234 |
Q |
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| T |
31320445 |
acaggatgtaaagct |
31320459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 31332498 - 31332712
Alignment:
| Q |
20 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332498 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
31332597 |
T |
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| Q |
120 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
219 |
Q |
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| T |
31332598 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
31332697 |
T |
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| Q |
220 |
acaggatgcaaagct |
234 |
Q |
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| T |
31332698 |
acaggatgtaaagct |
31332712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 3425 - 3211
Alignment:
| Q |
20 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
3326 |
T |
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| Q |
120 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
219 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
3325 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
3226 |
T |
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| Q |
220 |
acaggatgcaaagct |
234 |
Q |
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|||||||| |||||| |
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| T |
3225 |
acaggatgtaaagct |
3211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 234
Target Start/End: Complemental strand, 33522105 - 33521949
Alignment:
| Q |
83 |
aagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaaaaggtga-----gaaacaagggactcaagct |
177 |
Q |
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|||| ||||||||||| ||||||||| ||| | ||||||| |||||||| ||| ||||||||| ||||||| || ||||||||||| | | | |
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| T |
33522105 |
aagtcgattatgtgccgagaaattcatcagagcatcattactgtggttcttgtaactatggttgtacaaaaggagataaacaaaacaagggaccgatgtt |
33522006 |
T |
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| Q |
178 |
acatggcttgtagatgctgttgaaaaagatgctgtgataataacaggatgcaaagct |
234 |
Q |
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| T |
33522005 |
acatggcttgtcgatgctgtggaacacggtgctgtaatactaacaagatgcaaagct |
33521949 |
T |
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