View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19445_high_64 (Length: 229)
Name: NF19445_high_64
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_high_64 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 42171442 - 42171349
Alignment:
| Q |
20 |
aagtaatcctctgagacaaagaaatactacagagggagcatcaatagtgtcatgtgggaagatacagtgtgtggtacatttgaattagtcaaca |
113 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42171442 |
aagtaatcttcagagacaaagaaatactacagagggagcatcaatagtgtcatgtgggaagatacagtgtgtggtacatttgaattagtcaaca |
42171349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 10012082 - 10011959
Alignment:
| Q |
20 |
aagtaatcctctgagacaaagaaatactacagagggagcatcaatagtgtcatgtgggaagatacagtgtgtggtacatttgaattagtcaacatagtca |
119 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| | |
|
|
| T |
10012082 |
aagtaatcctcagagacaaagaaataccactaaggaagcatcaatagtgtcatgtgggaagacacagtgtatggttcatttgaattagtcaacatagtaa |
10011983 |
T |
|
| Q |
120 |
tgcatcaaaagcatgttatgataa |
143 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
10011982 |
tgtatcaaaagcatgttatgataa |
10011959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 39294406 - 39294333
Alignment:
| Q |
140 |
ataacctgcgctttttaaaatcctgccttctggccgccgctttaaacgcagacgtctcagatttcaatttctgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
39294406 |
ataacctgcgctttttaaaatcctgccttctggccgccgctttaaacacagatgtctcagatttcaatttctgt |
39294333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 39302963 - 39302890
Alignment:
| Q |
140 |
ataacctgcgctttttaaaatcctgccttctggccgccgctttaaacgcagacgtctcagatttcaatttctgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39302963 |
ataacctgcgctttttaaaatcctgccttctggcggccgctttaaacgcagacgtctcagttttcaatttctgt |
39302890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 17347475 - 17347544
Alignment:
| Q |
140 |
ataacctgcgctttttaaaatcctgccttctggccgccgctttaaacgcagacgtctcagatttcaattt |
209 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||| | || ||||||| ||||||||||||||||||||||| |
|
|
| T |
17347475 |
ataaccagcgcttttttaaatcagaccttctggtcaccactttaaatgcagacgtctcagatttcaattt |
17347544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 56181924 - 56181880
Alignment:
| Q |
90 |
gtggtacatttgaattagtcaacatagtcatgcatcaaaagcatg |
134 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
56181924 |
gtggtacgtttggattagtcaacatagtaatgtatcaaaagcatg |
56181880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University