View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_1 (Length: 762)
Name: NF19445_low_1
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 18 - 749
Target Start/End: Original strand, 56278311 - 56279058
Alignment:
| Q |
18 |
atacatctatgacatgaagaatcacaagattgctcatgcttgttcctttctacaactcaacccacaatccttgtcgcatcctacagtatttcctcattcc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278311 |
atacatctatgacatgaagaatcacaagattgctcatgcttgttcctttctacaactcaacccacaatccttgtcgcatcctacagtatttcctcattcc |
56278410 |
T |
|
| Q |
118 |
ttgactttggtttccctaaaagatccttagtatagaactaactcctatatattagcttttattatcggattatcaccgaatgttttgggaccattttagt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
56278411 |
ttgactttggtttccctaaaagatccttagtatagaactaactcctatatattagcttttattatcggattatcaccgaatgttttgggat-attttagt |
56278509 |
T |
|
| Q |
218 |
ttatatatatgtagaaactaagttgcctggaaggttccttccttcc----attccatagctgtggaa-------------gttatatattcttactagcc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
56278510 |
ttatatatatgtagaaactaagttgcctggaaggttccttccttccttccattccatagctgtggaaattttgagctgaagttatatattcttactagcc |
56278609 |
T |
|
| Q |
301 |
attttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctgccatgagttattaatagtatttcagtcaatgcata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
56278610 |
attttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctgcaatgagttgttaatagtatttcagtcaatgcata |
56278709 |
T |
|
| Q |
401 |
accatttgatctttgcatacttttgcttgttaagtatctggcaatgttttatgatgagtttattttctatttctttgataaaagaaggactaaggagtgt |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278710 |
accatttgatctttgcatacttttgcttgttaagtatctgccaatgttttatgatgagtttattttctatttctttgataaaagaaggactaaggagtgt |
56278809 |
T |
|
| Q |
501 |
tctaggacttctaaaacagttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaatagtcacattacatgacactaaagt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56278810 |
tctaggacttctaaaacagttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaatagtcacattacatgacactaaagt |
56278909 |
T |
|
| Q |
601 |
atctcacccaattctaccaaccctgtgcattggcctattccagtatacaattaaaatagctccctgcaacgcctacatccatctcacccaacataactac |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278910 |
atctcacccaattctaccaaccctgtgcattggcctattccaatatacaattaaaatagctccctgcaacgcctacatccatctcacccaacataactac |
56279009 |
T |
|
| Q |
701 |
tgaactgatcataactctgccataatgcaaaatgattcagcagtataat |
749 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56279010 |
tgaactgatcataactctgccataatgcaaaatgattcagcagtataat |
56279058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 278 - 694
Target Start/End: Original strand, 46571223 - 46571641
Alignment:
| Q |
278 |
gaagttatatattcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctgcca-tgagttat |
376 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||| || |||||| |
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| T |
46571223 |
gaagttatatattcttactaaccattttagtat----gtggacaaatttcagttgatcaatggtttcaagtttcaaataatatttctggcaatgagttga |
46571318 |
T |
|
| Q |
377 |
taatagtatttcagtcaatgcataaccatttgatctttgcatacttttgcttgttaagtatctggcaatgttttatgatgagtttattttctatttcttt |
476 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||| ||| |
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| T |
46571319 |
taatagtatttcagtcaatgcataaccatttcatctttgcatacttttgcttgttaaatatctgacattgttttatgatgaatttattttctatttattt |
46571418 |
T |
|
| Q |
477 |
gataaaagaaggactaaggagtgttctaggacttctaaaacagttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaat |
576 |
Q |
| |
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||| |||||||||||||| ||||| ||||| | | || || |||| || |||||||||||||| |||||||||||||||||||||||||| |
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| T |
46571419 |
gat-aaagaaggactaagaagtgtcataggattgc---aatgaatatttctaacgagcacaacacatgc----catgtgatattggtttacatcaagaat |
46571510 |
T |
|
| Q |
577 |
agtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattcca-------------gtatacaattaaaatagctcc |
663 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||| |
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| T |
46571511 |
agtcacattacatgacactaaagtatctcaccaaattctaccagccccgtgcattggccaattccaaaagacagcacccaaatacaattagaatagctcc |
46571610 |
T |
|
| Q |
664 |
ctgcaacgcctacatccatctcacccaacat |
694 |
Q |
| |
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|||||| |||||||||||||||||||||||| |
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| T |
46571611 |
ctgcaatgcctacatccatctcacccaacat |
46571641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 15979284 - 15979201
Alignment:
| Q |
278 |
gaagttatatattcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctg |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15979284 |
gaagttatatattcttactagccattttagtat----gtggagaaatttgagttgatcaatgttttcaagtttcaattaatatttctg |
15979201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 19125690 - 19125618
Alignment:
| Q |
289 |
ttcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctg |
365 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19125690 |
ttcttactcgccattttagtat----gtggacaaatttgagttgatcaatgttttcaagtttcaatgaatatttctg |
19125618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 308
Target Start/End: Complemental strand, 19146637 - 19146607
Alignment:
| Q |
278 |
gaagttatatattcttactagccattttagt |
308 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
19146637 |
gaagttatatattcttactagccattttagt |
19146607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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