View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_10 (Length: 542)
Name: NF19445_low_10
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 173 - 499
Target Start/End: Complemental strand, 15871131 - 15870805
Alignment:
| Q |
173 |
tgcattcaacgttatactacgtcatgaaaattaaacgatattaactatttttgttgcttatgtacgagacgatagaaagtaataatcatcgtgaaaatct |
272 |
Q |
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| T |
15871131 |
tgcattcaatgttatattacgtcatgaaaattaaacgatattaactatttttgttgcttatgtacgagacgatagaaagtaataatcatcgtgaaaatct |
15871032 |
T |
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| Q |
273 |
cgtaatctaggtatgttgttattgcttacctagcaacttcagcgcgtcgcttagcctgctcagcaatctcagacaattctctataagtgttcttgtcatt |
372 |
Q |
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| T |
15871031 |
cgtaatctaggtatgttgttattgcttacctagcaacttcagcgcgtcgcttagcctgctcagcaatctcagacaattctctataagtgttcttgtcatt |
15870932 |
T |
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| Q |
373 |
gaagagactagaagtttcttgtggtgctgaaagtccatgaagggtcctttgagcatgtgcccattgagcttccctctcctcttttccatagtccttttta |
472 |
Q |
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| T |
15870931 |
gaagagactagaagtttcttctggtgctgaaagtccatgaagggtcctttgagcatgtgcccattgagcttccctctcctcttttccgtagtccttttta |
15870832 |
T |
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| Q |
473 |
ttggggaaggcagtctaaaacacacat |
499 |
Q |
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| T |
15870831 |
ttggtaaaggcagtctaaaacacacat |
15870805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 15871359 - 15871178
Alignment:
| Q |
1 |
ctacaacaacatttgtctgtgttgcttatattacacagtgtaatgttgttgcatagtctctatgtcaagtcctttcagcttcacaacagattcaacatgt |
100 |
Q |
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| T |
15871359 |
ctacaacaacatttgtctgtgttgcttatattacacagtgtaatgttgttgcatagtctctatgtccagtcctttcagcttcacaacagattcaacatgt |
15871260 |
T |
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| Q |
101 |
cctttaagggtatgaagctcacgaagcctgtaaatagggaaaattgagaaagagttaaatttcaagtattagtgcattcaac |
182 |
Q |
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| T |
15871259 |
cctttaagggtatgaagttcacgaagcctgtaaagagtgaaaattcagaaaaagttaaatttcaagtattagttcattcaac |
15871178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 45195920 - 45196005
Alignment:
| Q |
35 |
acagtgtaatgttgttgcatagtctctatgtcaagtcctttcagcttcacaacagattcaacatgtcctttaagggtatgaagctc |
120 |
Q |
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| T |
45195920 |
acagtgtagtgttgttggattgtctcaatgtcaagtcccttgagttttacaacagactcaacatgtcctttcagtgtgtgaagctc |
45196005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 295 - 465
Target Start/End: Original strand, 53073970 - 53074137
Alignment:
| Q |
295 |
tgcttacctagcaacttcagcgcgtcgcttagcctgctcagcaatctcagacaattctctataagtgttcttgtcattgaagagactagaagtttcttgt |
394 |
Q |
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||||||||| ||||||||||| | || ||| || |||||||||||||| |||| |||||| ||| || |||| |||||||| | || |||| ||||| || |
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| T |
53073970 |
tgcttaccttgcaacttcagctcttctcttcgcttgctcagcaatctcggacagttctctgtaactgctcttctcattgaaaataccagaactttctggt |
53074069 |
T |
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| Q |
395 |
ggtgctgaaagtccatgaagggtcctttgagcatgtgcccattgagcttccctctcctcttttccatagtc |
465 |
Q |
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| T |
53074070 |
ggt--tgaa-gtccatgtagagtcctctgagcatgtgcccattgagcttccctctcctcttttccatagtc |
53074137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 53073812 - 53073875
Alignment:
| Q |
71 |
cctttcagcttcacaacagattcaacatgtcctttaagggtatgaagctcacgaagcctgtaaa |
134 |
Q |
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| T |
53073812 |
cctttcagcttcaccacagattcaacatgtcccttgagtgtgtgaagctcacgaagcctgtaaa |
53073875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 48434867 - 48434949
Alignment:
| Q |
38 |
gtgtaatgttgttgcatagtctctatgtcaagtcctttcagcttcacaacagattcaacatgtcctttaagggtatgaagctc |
120 |
Q |
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| T |
48434867 |
gtgtagtgttgttgaatcgtatcaatgtcaagacccttcaacttcaccacagattcaacatgtcccttgagtgtatggagctc |
48434949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 50278384 - 50278288
Alignment:
| Q |
35 |
acagtgtaatgttgttgcatagtctctatgtcaagtcctttcagcttcacaacagattcaacatgtcctttaagggtatgaagctcacgaagcctgt |
131 |
Q |
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||||| ||||||||||||||||| || || |||||||| || |||||||| || |||||||| || || || || || |||||||| | |||||||| |
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| T |
50278384 |
acagtataatgttgttgcatagtgtcgatatcaagtcccttaagcttcacgactgattcaacgtgaccctttagtgtgtgaagctccctaagcctgt |
50278288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 50278173 - 50278133
Alignment:
| Q |
305 |
gcaacttcagcgcgtcgcttagcctgctcagcaatctcaga |
345 |
Q |
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| T |
50278173 |
gcaacttcagcgcgtctcttggcttgctcagcaatctcaga |
50278133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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