View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19445_low_11 (Length: 541)

Name: NF19445_low_11
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19445_low_11
NF19445_low_11
[»] chr2 (7 HSPs)
chr2 (14-526)||(15870284-15870796)
chr2 (46-138)||(18835833-18835925)
chr2 (334-442)||(45196540-45196648)
chr2 (149-236)||(18835986-18836073)
chr2 (163-216)||(17511485-17511538)
chr2 (173-225)||(2010434-2010486)
chr2 (312-404)||(21979637-21979729)
[»] chr4 (4 HSPs)
chr4 (255-443)||(53074260-53074448)
chr4 (357-412)||(48435839-48435894)
chr4 (46-134)||(27128860-27128948)
chr4 (193-225)||(52906437-52906469)
[»] chr1 (2 HSPs)
chr1 (39-144)||(26128638-26128743)
chr1 (394-443)||(1495853-1495902)
[»] chr3 (6 HSPs)
chr3 (69-140)||(4194815-4194886)
chr3 (60-124)||(3009406-3009470)
chr3 (495-526)||(21754772-21754803)
chr3 (164-211)||(24882240-24882287)
chr3 (147-216)||(47364811-47364880)
chr3 (193-225)||(13806160-13806192)
[»] chr7 (3 HSPs)
chr7 (60-118)||(28787612-28787670)
chr7 (193-235)||(29906649-29906691)
chr7 (60-140)||(41355717-41355796)
[»] chr6 (1 HSPs)
chr6 (46-134)||(2465661-2465749)


Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 14 - 526
Target Start/End: Complemental strand, 15870796 - 15870284
Alignment:
Q  14 tcatcaacatcgagcatatgtataaaaatcgttaacaaggtgataaaagacttgtgtagttaacaattgtgatagagaaaagatggaagtcaagatatga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870796 tcatcaacatcgagcatatgtataaaaatcgttaacaaggtgataaaagacttgtgtagttaacaattgtgatagagaaaagatggaagtcaagatatga 15870697  T
Q  114 agaatacattttcagaaacaacgaaaaaatgcaaaagaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870696 agaatacattttcagaaacaacgaaaaaatgcaaaagaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaa 15870597  T
Q  214 aaccgaaaacatgaaaagtaaactgctagaaatttgggaattaccttgttttcaagaagatttgtccaagctttgccgctcaagccatagcgaattgcaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870596 aaccgaaaacatgaaaagtaaactgctagaaatttgggaattaccttgttttcaagaagatttgtccaagctttgccgctcaagccatagcgaattgcaa 15870497  T
Q  314 acttgataatgtcaagaggaatatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagtt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870496 acttgataatgtcaagaggaatatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagtt 15870397  T
Q  414 ggcatatactgctattaatgtagcaatctgaaaagaaaaacaaaacctcaaaacaagtccaattggcatatacgcagttatactgatgaacatgtcataa 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  15870396 ggcatatactgctattaatgtagcaatctgaaaagaaaaacaaaacctcaaaacaagtccaattcgcatatacgcagttataccgatgaacatatcataa 15870297  T
Q  514 gttgttttcatat 526  Q
    |||||||||||||    
T  15870296 gttgttttcatat 15870284  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 18835833 - 18835925
Alignment:
Q  46 taacaaggtgataaaagacttgtgtagttaacaattgtgatagagaaaagatggaagtcaagatatgaagaatacattttcagaaacaacgaa 138  Q
    |||||||| | || |||||| ||||||  |||||||||||||||||  |  ||||||  ||| || ||||||| |||||||||||||||||||    
T  18835833 taacaaggaggtagaagactcgtgtagcgaacaattgtgatagagattaagtggaaggtaagttaggaagaatgcattttcagaaacaacgaa 18835925  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 45196540 - 45196648
Alignment:
Q  334 atatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagttggcatatactgctattaatg 433  Q
    ||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||||||||||  || ||||||||  |||| || ||||| || ||||| | ||    
T  45196540 atatagaaaataatgctgtagagccaaatgacacctgcccaaccccatccaattcctttcatacttgcaaactcccaatttgcatacacagctatcagtg 45196639  T
Q  434 tagcaatct 442  Q
    | |||||||    
T  45196640 tggcaatct 45196648  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 18835986 - 18836073
Alignment:
Q  149 agaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaaccgaaaacatgaaaagtaaac 236  Q
    |||||||  |||||| |||| | | ||||||||| ||||| |  |||||||||||||||||| ||||| | || ||||||||||||||    
T  18835986 agaaaatgatgatgagaatagtgggtctatattattttatatttattagttgaagtgaaaataaaaacaggaatcatgaaaagtaaac 18836073  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 17511538 - 17511485
Alignment:
Q  163 aaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaac 216  Q
    ||||| || ||||||||||| |||||||  || |||||||||||||||||||||    
T  17511538 aaaatgttggatctatattattttatgtttatcagttgaagtgaaaatgaaaac 17511485  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 2010434 - 2010486
Alignment:
Q  173 atctatattagtttatgtcaattagttgaagtgaaaatgaaaaccgaaaacat 225  Q
    ||||||||||  ||||||  ||||||||||| |||||||||||| ||||||||    
T  2010434 atctatattatattatgtttattagttgaagagaaaatgaaaacagaaaacat 2010486  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 404
Target Start/End: Original strand, 21979637 - 21979729
Alignment:
Q  312 aaacttgataatgtcaagaggaatatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaa 404  Q
    |||||||| ||||||||||||||| ||   ||| || ||||| | |||||| ||||| ||||||| ||| |||||||| | |||||| |||||    
T  21979637 aaacttgagaatgtcaagaggaatgtatgtaataatgctgtagatccagataactccagcccatctccacccaattccattgattctagcaaa 21979729  T

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Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 255 - 443
Target Start/End: Original strand, 53074260 - 53074448
Alignment:
Q  255 taccttgttttcaagaagatttgtccaagctttgccgctcaagccatagcgaattgcaaacttgataatgtcaagaggaatatagaaaatgatactgtaa 354  Q
    ||||||||| || || |||||  ||||||| ||||| |||||    ||||| || |||||||| || | ||| || ||||||||||| |  || |||||     
T  53074260 taccttgttgtctaggagattgttccaagccttgccactcaatatgtagcggatggcaaacttcatcacgtcgagtggaatatagaagacaatgctgtag 53074359  T
Q  355 agccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagttggcatatactgctattaatgtagcaatctg 443  Q
    |||||||| ||||||||||| ||||||||||||||||| |   |||| ||||||||||||||||||||||||||||  |||||||||||    
T  53074360 agccagattactcctgcccaaccccaaccaattccttgtacctttgcgaatccccagttggcatatactgctattatggtagcaatctg 53074448  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 48435839 - 48435894
Alignment:
Q  357 ccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagt 412  Q
    |||||| ||||| ||||||| |||||||||||| | |||||| |||||||||||||    
T  48435839 ccagattactccagcccatctccaaccaattccattgattctagcaaatccccagt 48435894  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 27128860 - 27128948
Alignment:
Q  46 taacaaggtgataaaagacttgtgtagttaacaattgtgatagagaaaagatggaagtcaagatatgaagaatacattttcagaaacaa 134  Q
    |||||||| ||| || ||||  |||||| ||||||||||||||| | || ||||||| |||| || | ||||| | |||||||||||||    
T  27128860 taacaaggagatgaacgactaatgtagtaaacaattgtgatagatacaaaatggaagacaagctacggagaatgcgttttcagaaacaa 27128948  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 52906437 - 52906469
Alignment:
Q  193 attagttgaagtgaaaatgaaaaccgaaaacat 225  Q
    |||||||||||||||||||||||| ||||||||    
T  52906437 attagttgaagtgaaaatgaaaacagaaaacat 52906469  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 26128743 - 26128638
Alignment:
Q  39 aaatcgttaacaaggtgataaaagacttgtgtagttaacaattgtgatagagaaaagatggaagtcaagatatgaagaatacattttcagaaacaacgaa 138  Q
    |||| |||||||||  ||| ||||||||||||||  ||||||||||||||||||||| ||||||  ||| ||  |||||| |||||| |||||||| |||    
T  26128743 aaattgttaacaagtagatgaaagacttgtgtagggaacaattgtgatagagaaaaggtggaaggaaagctagaaagaatgcatttttagaaacaatgaa 26128644  T
Q  139 aaaatg 144  Q
    | ||||    
T  26128643 acaatg 26128638  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 1495853 - 1495902
Alignment:
Q  394 attcttgcaaatccccagttggcatatactgctattaatgtagcaatctg 443  Q
    ||||||||||||||||| || ||||| |||||||| ||||| ||||||||    
T  1495853 attcttgcaaatccccaattagcatacactgctataaatgttgcaatctg 1495902  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 4194815 - 4194886
Alignment:
Q  69 gtagttaacaattgtgatagagaaaagatggaagtcaagatatgaagaatacattttcagaaacaacgaaaa 140  Q
    ||||| ||||||||||||||||| ||||| ||||  || ||| ||||| | |||||||||||||||||||||    
T  4194815 gtagtgaacaattgtgatagagagaagatagaaggtaaaataggaagattgcattttcagaaacaacgaaaa 4194886  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 3009406 - 3009470
Alignment:
Q  60 aagacttgtgtagttaacaattgtgatagagaaaagatggaagtcaagatatgaagaatacattt 124  Q
    |||||| ||| ||| ||||||||||||||| |||||||| ||| ||||||| ||||||| |||||    
T  3009406 aagactagtgcagtgaacaattgtgatagacaaaagatgaaaggcaagataggaagaatgcattt 3009470  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 526
Target Start/End: Original strand, 21754772 - 21754803
Alignment:
Q  495 actgatgaacatgtcataagttgttttcatat 526  Q
    ||||||||||||||||||||||||||||||||    
T  21754772 actgatgaacatgtcataagttgttttcatat 21754803  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 24882240 - 24882287
Alignment:
Q  164 aaatattcgatctatattagtttatgtcaattagttgaagtgaaaatg 211  Q
    ||||||| ||||||||||| |||||||  |||||||||||||||||||    
T  24882240 aaatattagatctatattattttatgtttattagttgaagtgaaaatg 24882287  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 47364811 - 47364880
Alignment:
Q  147 aaagaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaac 216  Q
    ||||||||| |||| |||||||||  || ||| ||  |||||||  ||||||||||||||||||||||||    
T  47364811 aaagaaaatggtgaggaaaatattaaatttattttcttttatgtttattagttgaagtgaaaatgaaaac 47364880  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 13806160 - 13806192
Alignment:
Q  193 attagttgaagtgaaaatgaaaaccgaaaacat 225  Q
    |||||||||||||||||||||||| ||||||||    
T  13806160 attagttgaagtgaaaatgaaaacagaaaacat 13806192  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 28787612 - 28787670
Alignment:
Q  60 aagacttgtgtagttaacaattgtgatagagaaaagatggaagtcaagatatgaagaat 118  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||  || |||||||||||    
T  28787612 aagacttatgtagtgaacaattgtgatagagagaagatggaagggaatatatgaagaat 28787670  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 29906649 - 29906691
Alignment:
Q  193 attagttgaagtgaaaatgaaaaccgaaaacatgaaaagtaaa 235  Q
    |||||||||||||||||||||||| | |||||||| |||||||    
T  29906649 attagttgaagtgaaaatgaaaacagtaaacatgagaagtaaa 29906691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 41355796 - 41355717
Alignment:
Q  60 aagacttgtgtagttaacaattgtgatagagaaaagatggaagtcaagatatgaagaatacattttcagaaacaacgaaaa 140  Q
    |||||||||||||| |||| |||||| ||| | |||||||| | |||| ||  |||||| ||||||||||||||| |||||    
T  41355796 aagacttgtgtagtgaacatttgtga-agacagaagatggatgacaagctagaaagaatgcattttcagaaacaatgaaaa 41355717  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 2465661 - 2465749
Alignment:
Q  46 taacaaggtgataaaagacttgtgtagttaacaattgtgatagagaaaagatggaagtcaagatatgaagaatacattttcagaaacaa 134  Q
    |||||||| ||| || ||||  |||||| ||||||||||||||| | || ||||||| |||| || | ||||| | |||||||||||||    
T  2465661 taacaaggagatgaacgactaatgtagtaaacaattgtgatagatacaaaatggaagacaagctacggagaatgcgttttcagaaacaa 2465749  T

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