View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_13 (Length: 513)
Name: NF19445_low_13
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_13 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 283 - 513
Target Start/End: Original strand, 32831546 - 32831778
Alignment:
| Q |
283 |
tcgcctttaccctttcaagtggaaacacaataaattata--gacaagatagcaggtaaattagggagcaccaaaccgtaagactgagcagatatgaaaaa |
380 |
Q |
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| T |
32831546 |
tcgccttcaccttttaaagtggaaacacaataaattatatagacaagatagcaggtaaattagggagcaccaaaccgtaagactgagcagatatgaaaaa |
32831645 |
T |
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| Q |
381 |
caaagtcatagaaacctcactaacgcatgcaaatttgcaagttgaaaccagttcaataaacacatgccataaaagatcaacacaagtcatcatggtgaaa |
480 |
Q |
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| T |
32831646 |
caaagtcatagaaacctcactaacgcatgcaaatttgcaagttgaaaccagttcaataaacacatgccataaaaaatcaacacaagtcatcatagtgaaa |
32831745 |
T |
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| Q |
481 |
gtcgaaaactatcagaatttacagacaaaatct |
513 |
Q |
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| T |
32831746 |
gtcaaaaactatcagaatttacagacaaaatct |
32831778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 36203036 - 36203285
Alignment:
| Q |
16 |
caataatgatatgacttatgagaggtgcgtgtaacttataacctgnnnnnnnnnnn--cagtgagtactttttatgcattcaacttcaagtgttttaatt |
113 |
Q |
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| T |
36203036 |
caataatgatatgacttatgagaggtgcgtgtaacttataacctgtttttttttctttcagtgagtactttttatgcattcaacttcaagtgttttaatt |
36203135 |
T |
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| Q |
114 |
gtcnnnnnnnnnnnnncttcgaagtgtttaaaatagaaataaatgaagttagttatataataaaagctgttggtaggtaaaaagtatttcaaatttcata |
213 |
Q |
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| T |
36203136 |
gtcaaaaaaaaaaaaactttgaagtgtttaaaatataaataaatgaagttagttatataataaaagctgttggtaggtaaaaagtatttcaaatttcata |
36203235 |
T |
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| Q |
214 |
ttcatatcagaagtgtaacgtgattcaactcatcaacgaccctttgaagg |
263 |
Q |
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| T |
36203236 |
ttcatatcagaagtgtaacgtgattcaactcatcaacgatcctttgaagg |
36203285 |
T |
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