View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_16 (Length: 472)
Name: NF19445_low_16
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 82 - 455
Target Start/End: Complemental strand, 5175087 - 5174711
Alignment:
| Q |
82 |
tataattgagtttcatttggacaaaccaaattggaa---atcttaatctgtctaaggtcattttttgcttagcttggactattgaaatttactaactgct |
178 |
Q |
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| T |
5175087 |
tataattgagtttcatttggacaaacccaattggaattaatcttaatctgtctaaggtcattttttgctt-----ggactattgaaatttactaactgct |
5174993 |
T |
|
| Q |
179 |
agtgactacatctattatctttttgtttttaactcattattgccatttttattgtcaataataatgattactactgtgttgcctaaggtaatgtttagag |
278 |
Q |
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| T |
5174992 |
agtgactacatctattatctttttgtttttaactcattattgccatttttattgtcaataataatgattactactgtgttgcctaaggtaatgtttagag |
5174893 |
T |
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| Q |
279 |
taagacaaggggagggatttaagtatatatttttaactcctatggctatgtttctcctaccatca---ctactctgccggattcatgcaga-ttatgatt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
5174892 |
taagacaaggggagggatttaagtatatatttttaactcctatggctatgtttctcctaccatcaaatctactctgccggattcatgcagatttatgatt |
5174793 |
T |
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| Q |
375 |
tgtgttttttaacataagaaacaaaga-tctgagaaaccagagaatattggaattgagactgtacaaatgatacaagtattt |
455 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174792 |
tgtgttttttaacataagaaacaaagattctgagaaaccagagaatattggaattgagactgtacaaatgatacaagtattt |
5174711 |
T |
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