View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_18 (Length: 460)
Name: NF19445_low_18
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 443
Target Start/End: Original strand, 39909332 - 39909766
Alignment:
| Q |
7 |
aatatatatagtcagagaataacgtgcatggtcagcaaaatccttggagagttgtaaatgttaatcttaataacaataaggaggaatattcctttnnnnn |
106 |
Q |
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| T |
39909332 |
aatatatatagtcagagaataacgtgcatggtcagcaaaatccttggagagttgtaaatgttaatcttaataacaataaggaggaatattcctttaaaaa |
39909431 |
T |
|
| Q |
107 |
nnnnnnnnncaataaggaggaatatcatcttgtaattattaataacaataagcaggaatatcatcttgtaatttttaatttaacaatattattccattcc |
206 |
Q |
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| T |
39909432 |
aaaaaaaa-caataaggaggaatatcatcttgtaattattaataacaataagcaggaatatcatcttgtaatttttaatttaacaatattattccattcc |
39909530 |
T |
|
| Q |
207 |
gtgtgtttgcaagggtatatgtgtgtaatatgcttctgagttgaccgccaattgttcgaaaataaaagttgaatcttaaaattctactcctaagtacata |
306 |
Q |
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| T |
39909531 |
gtgtgtttgcaagggtatatgtgtgtaatatgcttctgagttgaccaccaattgttcgaaaataaaagttgaatcttaaaattctactcctaagtacata |
39909630 |
T |
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| Q |
307 |
atatttgggtccatctaatatggacttnnnnnnntatccaaattcagatctttataaaaatgttaaatggctttcacgaagtcgtcatcaaattatgtgg |
406 |
Q |
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|| |||||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39909631 |
atttttgggtccatctaatatggacttaaaaaaatatccaaatttagatctttat--aaatgtttaatggctttcacgaagtcgtcatcaaattatgtgg |
39909728 |
T |
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| Q |
407 |
t-nnnnnnncttaaccatgcgaatctaactatcaccat |
443 |
Q |
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| T |
39909729 |
taaaaaaaacttaaccatgcgaatctaactatcaccat |
39909766 |
T |
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