View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19445_low_19 (Length: 456)

Name: NF19445_low_19
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19445_low_19
NF19445_low_19
[»] chr8 (1 HSPs)
chr8 (403-440)||(42919099-42919136)
[»] chr7 (1 HSPs)
chr7 (411-440)||(21945427-21945456)
[»] chr6 (1 HSPs)
chr6 (402-439)||(2452063-2452100)
[»] chr5 (1 HSPs)
chr5 (411-440)||(19599501-19599530)
[»] chr3 (2 HSPs)
chr3 (411-440)||(53536904-53536933)
chr3 (403-439)||(3348986-3349022)
[»] chr1 (3 HSPs)
chr1 (411-440)||(4756630-4756659)
chr1 (403-439)||(26060703-26060739)
chr1 (404-440)||(38201886-38201922)


Alignment Details
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 440
Target Start/End: Complemental strand, 42919136 - 42919099
Alignment:
Q  403 tttgtcataaattataagtcgttttgcaatatcaatgt 440  Q
    |||||| |||||||||||||||||||||||||||||||    
T  42919136 tttgtcctaaattataagtcgttttgcaatatcaatgt 42919099  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Complemental strand, 21945456 - 21945427
Alignment:
Q  411 aaattataagtcgttttgcaatatcaatgt 440  Q
    ||||||||||||||||||||||||||||||    
T  21945456 aaattataagtcgttttgcaatatcaatgt 21945427  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 2452100 - 2452063
Alignment:
Q  402 ttttgtcataaattataagtcgttttgcaatatcaatg 439  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  2452100 ttttatcataaattataagtcgttttacaatatcaatg 2452063  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Complemental strand, 19599530 - 19599501
Alignment:
Q  411 aaattataagtcgttttgcaatatcaatgt 440  Q
    ||||||||||||||||||||||||||||||    
T  19599530 aaattataagtcgttttgcaatatcaatgt 19599501  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Complemental strand, 53536933 - 53536904
Alignment:
Q  411 aaattataagtcgttttgcaatatcaatgt 440  Q
    ||||||||||||||||||||||||||||||    
T  53536933 aaattataagtcgttttgcaatatcaatgt 53536904  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 3349022 - 3348986
Alignment:
Q  403 tttgtcataaattataagtcgttttgcaatatcaatg 439  Q
    |||||| |||||||||||||||||| |||||||||||    
T  3349022 tttgtcctaaattataagtcgttttacaatatcaatg 3348986  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Complemental strand, 4756659 - 4756630
Alignment:
Q  411 aaattataagtcgttttgcaatatcaatgt 440  Q
    ||||||||||||||||||||||||||||||    
T  4756659 aaattataagtcgttttgcaatatcaatgt 4756630  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 26060739 - 26060703
Alignment:
Q  403 tttgtcataaattataagtcgttttgcaatatcaatg 439  Q
    |||||| |||||||||||||||||| |||||||||||    
T  26060739 tttgtcttaaattataagtcgttttacaatatcaatg 26060703  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 38201886 - 38201922
Alignment:
Q  404 ttgtcataaattataagtcgttttgcaatatcaatgt 440  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  38201886 ttgtcctaaattataagttgttttgcaatatcaatgt 38201922  T

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