View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_22 (Length: 435)
Name: NF19445_low_22
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 420
Target Start/End: Complemental strand, 31407838 - 31407429
Alignment:
| Q |
12 |
atgaatgagacttaaaggatcacggattaacttattcaatgagttcctagggatgaacaatatttcttgtgga------gaaacgagcaaatgaactgtt |
105 |
Q |
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| T |
31407838 |
atgaatgagacttaaagggtcacggattaacttattcaatgagttcctagggatgaacaatatttcttgtggacttatagaaacgagcaaatgaactgtt |
31407739 |
T |
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| Q |
106 |
tgaatcacaatataatgaaattgaaaccaagattatgtgaaagtgatatttgattttgtcaattgatgtgtgtcatgcaggttgtgcgtaagccagcaca |
205 |
Q |
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| T |
31407738 |
-----cacaatatgatgaaattgaaaccaagattatgtgaaagtgatatttgattgtgtgaattgatgtgtgtcatgcaggttgtgcgtaagccagcaca |
31407644 |
T |
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| Q |
206 |
tcatttcttggacgagcttgaaattgagtatgacgaacaggacgactatgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagcta |
305 |
Q |
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| T |
31407643 |
tcatttcttggacgagcttgaaattgagtatgatgaacaggacgactatgtagtgatcaagcatgctgctctcttcacttccaccatcatgagcaagcta |
31407544 |
T |
|
| Q |
306 |
ctagcaaggccaaacgtgaagcttttcaatgctgtagctgctgaggatttgattgtgaagaatggaagagttggcggtgttgtcactaattgggctttgg |
405 |
Q |
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| T |
31407543 |
ctagcaaggccaaacgtgaagcttttcaatgctgtagctgctgaggatttgattgtgaagaatgaaagagttggtggtgttgtcactaactgggctttgg |
31407444 |
T |
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| Q |
406 |
tttcaatgaaccatg |
420 |
Q |
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| T |
31407443 |
tttcaatgaaccatg |
31407429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 420
Target Start/End: Complemental strand, 47481722 - 47481531
Alignment:
| Q |
229 |
ttgagtatgacgaacaggacgactatgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtgaagct |
328 |
Q |
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|||| ||||||||||| || ||||| || || ||||| ||||||||||| |||||||| || |||||||||||||| || |||| || || || || || |
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| T |
47481722 |
ttgaatatgacgaacaagaagactacgttgtcatcaaacacgctgctctattcacttcaaccatcatgagcaagcttcttgcaaaacctaatgtaaaact |
47481623 |
T |
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| Q |
329 |
tttcaatgctgtagctgctgaggatttgattgtgaagaatggaagagttggcggtgttgtcactaattgggctttggtttcaatgaaccatg |
420 |
Q |
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| T |
47481622 |
tttcaatgctgttgctgctgaggatttgattgtgaaggaaaacagagttgctggtgttgttacaaactgggctttggtttcgatgaaccatg |
47481531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 4220543 - 4220584
Alignment:
| Q |
261 |
atcaagcacgctgctctcttcacttccacaatcatgagcaag |
302 |
Q |
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| T |
4220543 |
atcaagcacgctgctctcttaacttccacaatcatgagcaag |
4220584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 4220463 - 4220500
Alignment:
| Q |
38 |
ttaacttattcaatgagttcctagggatgaacaatatt |
75 |
Q |
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| T |
4220463 |
ttaacttattcaatgagttcatagggatgaacaatatt |
4220500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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