View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_25 (Length: 418)
Name: NF19445_low_25
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 28267779 - 28267374
Alignment:
| Q |
1 |
atggacatcatcaattagtagaagtgctatgtcactgaaaaaactcaaaccaccgctttctataccatatcgcgacactgcatcaaatttctattcattg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28267779 |
atggacttcatcaattagtagaagtgctatgtcactgaaaaaactcaaaccaccgctttctataccatatcgcgacactgcatcaaatttctattcattg |
28267680 |
T |
|
| Q |
101 |
aaaaatgaactttagccacctcatagtgtcaacaaatcagtcagtgtgtgtgtcagtctgacaggaaaaataaatgtttattgtgtctctttggattgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28267679 |
aaaaatgaactttagccacctcatagtgtcaacaaatcagtcagtgtgtgtgtcagtctgacaggaaaaataaatgtttattgtgtctctttggattgag |
28267580 |
T |
|
| Q |
201 |
gaatacgtgcataaacatcataatttatgattactttgaaatctatgtccatttaatatttcaaagg-nnnnnnnngaaacaggaaagtacactaaagat |
299 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28267579 |
gaatacatgcataaacatcataatttatgattgctttgaaatctatgtccatttaatatttcaaaggaaaaaaaaagaaacaggaaagtacactaaagat |
28267480 |
T |
|
| Q |
300 |
taaagtgtcttggtatacttatgtttagataactctcatttgaatactgacctctggagtggttagaatgatatctgcttcatttatatttcttggagtg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28267479 |
taaagtgtcttggtatacttatgtttagataactctcatttgaatactgacctctggagtggttagaatgatatctgcttcatttatatttcttggagtg |
28267380 |
T |
|
| Q |
400 |
taagat |
405 |
Q |
| |
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|||||| |
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|
| T |
28267379 |
taagat |
28267374 |
T |
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