View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_26 (Length: 418)
Name: NF19445_low_26
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 31028201 - 31027799
Alignment:
| Q |
1 |
tatcaaacaaatacattgataatcagtacaaattcctacaaaaggaggaagacacaaactataacaaacgttgtcctcaacacaatacataggtaatgct |
100 |
Q |
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| T |
31028201 |
tatcaaacaaatacattgataatcagtacaaattcctacaaaaggaggaagacacaaactataacaaacgttgtcctcaacacaatacataggtaatgtt |
31028102 |
T |
|
| Q |
101 |
gtaatgtataacaaaatgttatcagtataaacgatggaggacaaaaatgtacgtataagataaagcaaaaaaggattagtgaaaggtcataccagagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31028101 |
gtaatgtataacaaaatgttatcagtataaac-atggaggataaaaatgtacgtataagataaagcaaaaaaggattagtgaaaggtcataccagagctt |
31028003 |
T |
|
| Q |
201 |
tcatcccttacaacaaaaaatatggaaatcaagaagatcgtagcataaannnnnnngagaaacttaatcata-nnnnnnnnctccttttgatgttaaaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
31028002 |
tcatcccttacaacaaaaaatatggaaatcaagatgatcgtagcataaaaaaatttgagaaacttaatcatatttttttttctccttttgatgttaaaaa |
31027903 |
T |
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| Q |
300 |
gataaatgtttatatcaatttatttataatggannnnnnnagagccaatcgagatgcaagaaatgattttgtcttttacatacattcatttgtcatgttt |
399 |
Q |
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| T |
31027902 |
gataaatgtttatatcaatttatttataatggatttttttagagccaatcgagatgcaagaaatgattttgtcttttacatacattcatttgtcatgttt |
31027803 |
T |
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| Q |
400 |
gtcc |
403 |
Q |
| |
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|||| |
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| T |
31027802 |
gtcc |
31027799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 31038094 - 31038045
Alignment:
| Q |
355 |
gcaagaaatgattttgtcttttacatacattcatttgtcatgtttgtcct |
404 |
Q |
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| T |
31038094 |
gcaataaatcatttggtcttttacatatattcatgtgtcatgtttgtcct |
31038045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 31032965 - 31033029
Alignment:
| Q |
169 |
aaaaggattagtgaaaggtcataccagagctttcatcccttacaacaaaaaatatggaaatcaag |
233 |
Q |
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|||||||| || ||||||||||||| ||| | | | |||||||||||||||| ||||||||||| |
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| T |
31032965 |
aaaaggatgagagaaaggtcatacctgagttaccgtgccttacaacaaaaaatgtggaaatcaag |
31033029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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