View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_28 (Length: 413)
Name: NF19445_low_28
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 38949403 - 38949795
Alignment:
| Q |
17 |
catacatacacatatatttcagactagcctaaagcccaatctgactccgctcgggtccgaccctagtcttttaaacatgagacaccatgcgacaaacaca |
116 |
Q |
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| T |
38949403 |
catacatacacatatatttcagactagcctaaagcccaatctgactccgctcgggtccgaccctagtcttttaaacatgagacaccatgcgacaaacaca |
38949502 |
T |
|
| Q |
117 |
tcataaagctcaccagatcacaatacaagctgagggtagcacatgaggcctaggagttacccacgccccacgcaggtcgaggataacccgtcctaggccg |
216 |
Q |
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| T |
38949503 |
tcataaagctcaccagatcacagtacaagctgagggtagcacatgaggtccgggagttacccacgccccacgcaggtcgaggataactcgtcctaggccg |
38949602 |
T |
|
| Q |
217 |
agagttg-ccactttcgtacatgaaggtatgaccgtcaggataaggtttgccaaccaaactctacc---ctactatttatacccatacattagccttggg |
312 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
38949603 |
agagttgcccactttcgtacatgaaggtatgaccgtcgggataaggtttgccaaccaaactctacctatccactatttatacccatacattagccttggg |
38949702 |
T |
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| Q |
313 |
gtcagacatgatatttcttatcctaaattgtgattgcacctcttgagacttgggcgtcggagcacttgcaggtacacaaacccccttcatctc |
405 |
Q |
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| T |
38949703 |
gtcagacatgacatttcttatcctaaattgtgattgcacctcttgagacttgggcgtcggagcacctgcaggtacacaaacccccttcatctc |
38949795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 358
Target Start/End: Original strand, 30876257 - 30876445
Alignment:
| Q |
172 |
gttacccacgccccacgcaggtcgaggataacccgtcctaggccgagagttgcc-actttcgtacatgaaggtatgaccgtcaggataaggtttgccaac |
270 |
Q |
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| T |
30876257 |
gttacccacgccc-acgcaggtcgaggataacttgccttaggccgagagttgcccacgtccatacctgaagatacaattttcagaataaggttttccgct |
30876355 |
T |
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| Q |
271 |
caaactctaccctac---tatttatacccatacattagccttggggtcagacatgatatttcttatcctaaattgtgattgcacctcttga |
358 |
Q |
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| T |
30876356 |
caaaccctaccttaccactatttatacctaggcattagccttgggtt-aggcttgacacttcttatcctcaattgtgattgcacctcttga |
30876445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 9415818 - 9415724
Alignment:
| Q |
253 |
aggataaggtttgccaaccaaactctacc---ctactatttatacccatacattagccttggggtcagacatgatatttcttatcctaaattgtga |
345 |
Q |
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|||||||||||||||| |||| | ||||| | ||||||||||||||| |||||||||| | |||| |||||| |||||| |||||||||||| |
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| T |
9415818 |
aggataaggtttgccagccaagccctacctaaccactatttatacccatgcattagcctt-gactcaggtatgatacttcttaccctaaattgtga |
9415724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 23268487 - 23268524
Alignment:
| Q |
359 |
gacttgggcgtcggagcacttgcaggtacacaaacccc |
396 |
Q |
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| T |
23268487 |
gacttgggcgtcggagcacgtgcaggtacacaaccccc |
23268524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 30682180 - 30682143
Alignment:
| Q |
360 |
acttgggcgtcggagcacttgcaggtacacaaaccccc |
397 |
Q |
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| T |
30682180 |
acttgggcgtcggagcaattgtaggtacacaaaccccc |
30682143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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