View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19445_low_30 (Length: 381)

Name: NF19445_low_30
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19445_low_30
NF19445_low_30
[»] chr3 (13 HSPs)
chr3 (160-210)||(22894005-22894055)
chr3 (160-210)||(11512389-11512439)
chr3 (160-210)||(29081705-29081755)
chr3 (170-221)||(22894005-22894056)
chr3 (151-192)||(20286888-20286929)
chr3 (166-207)||(20287013-20287053)
chr3 (157-210)||(31342006-31342059)
chr3 (166-207)||(31342116-31342156)
chr3 (166-207)||(32385366-32385407)
chr3 (165-210)||(48342794-48342839)
chr3 (170-210)||(28309087-28309127)
chr3 (160-192)||(48342210-48342242)
chr3 (160-192)||(49159511-49159543)
[»] scaffold1315 (1 HSPs)
scaffold1315 (165-210)||(1820-1865)
[»] scaffold1293 (1 HSPs)
scaffold1293 (165-210)||(206-251)
[»] chr6 (5 HSPs)
chr6 (165-210)||(16193835-16193880)
chr6 (165-210)||(369525-369570)
chr6 (165-210)||(2543849-2543894)
chr6 (192-221)||(369439-369468)
chr6 (165-209)||(28581739-28581783)
[»] chr1 (8 HSPs)
chr1 (165-210)||(10449455-10449500)
chr1 (160-210)||(28739419-28739469)
chr1 (157-210)||(45085927-45085979)
chr1 (155-210)||(44938792-44938847)
chr1 (165-207)||(15928081-15928122)
chr1 (192-221)||(6539696-6539725)
chr1 (169-210)||(50754735-50754776)
chr1 (174-210)||(28810066-28810102)
[»] chr5 (6 HSPs)
chr5 (150-210)||(896261-896321)
chr5 (170-210)||(12605661-12605701)
chr5 (165-210)||(5215676-5215721)
chr5 (173-210)||(42772071-42772108)
chr5 (160-192)||(19417438-19417470)
chr5 (160-192)||(29385418-29385450)
[»] chr2 (5 HSPs)
chr2 (150-210)||(7755328-7755388)
chr2 (165-204)||(13421801-13421840)
chr2 (157-206)||(5095749-5095798)
chr2 (166-210)||(15562212-15562256)
chr2 (160-192)||(39819056-39819088)
[»] chr4 (8 HSPs)
chr4 (167-210)||(30023651-30023694)
chr4 (169-210)||(53261101-53261142)
chr4 (166-210)||(54223561-54223605)
chr4 (170-220)||(11392303-11392353)
chr4 (172-210)||(46321359-46321397)
chr4 (165-206)||(42756296-42756337)
chr4 (160-212)||(30023485-30023537)
chr4 (160-192)||(31846924-31846956)
[»] chr7 (3 HSPs)
chr7 (160-210)||(7211862-7211912)
chr7 (160-210)||(17272701-17272751)
chr7 (159-210)||(32315708-32315759)
[»] chr8 (1 HSPs)
chr8 (166-205)||(33763466-33763505)


Alignment Details
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 22894055 - 22894005
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||||||    
T  22894055 tagcacttgggtgacattgtggttggtgacattgaccaaccacaatgtcac 22894005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 11512389 - 11512439
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  11512389 tagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 11512439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 29081755 - 29081705
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||| ||||||||| ||||||||||||||||||  ||||||||||||||||    
T  29081755 tagcacttgggtgatattgtggttggtgacattggtcaaccacaatgtcac 29081705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 22894005 - 22894056
Alignment:
Q  170 gtgacattgtggttggtgacattcatcaaccacaatgtcacccaagtgctac 221  Q
    ||||||||||||||||| |   ||| ||||||||||||||||||||||||||    
T  22894005 gtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagtgctac 22894056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 20286888 - 20286929
Alignment:
Q  151 aacaacggatagcgcttgggtgacattgtggttggtgacatt 192  Q
    ||||||||||| | ||||||||||||| ||||||||||||||    
T  20286888 aacaacggatatcacttgggtgacattatggttggtgacatt 20286929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 20287053 - 20287013
Alignment:
Q  166 ttgggtgacattgtggttggtgacattcatcaaccacaatgt 207  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  20287053 ttgggtgacattgtggttggtgacatt-accaaccacaatgt 20287013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 31342006 - 31342059
Alignment:
Q  157 ggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||  |||| ||||||||||||||||||||||   |||||||||||||||    
T  31342006 ggatagcatttggatgacattgtggttggtgacattggccaaccacaatgtcac 31342059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 31342156 - 31342116
Alignment:
Q  166 ttgggtgacattgtggttggtgacattcatcaaccacaatgt 207  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  31342156 ttgggtgacattgtggttggtgacatt-accaaccacaatgt 31342116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 32385366 - 32385407
Alignment:
Q  166 ttgggtgacattgtggttggtgacattcatcaaccacaatgt 207  Q
    ||||||||||||||| |||||||||||  |||||||||||||    
T  32385366 ttgggtgacattgtgattggtgacattggtcaaccacaatgt 32385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 48342794 - 48342839
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||||||||||| ||||||| ||||||  ||||||||||||||||    
T  48342794 cttgggtgacattatggttggcgacattggtcaaccacaatgtcac 48342839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 28309087 - 28309127
Alignment:
Q  170 gtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||||||||||||| ||||||| |||||||||||| ||||    
T  28309087 gtgacattgtggttgatgacattgatcaaccacaatatcac 28309127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 48342210 - 48342242
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacatt 192  Q
    |||| ||||||||||||||||||||||||||||    
T  48342210 tagcacttgggtgacattgtggttggtgacatt 48342242  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 49159543 - 49159511
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacatt 192  Q
    |||| ||||||||||||||||||||||||||||    
T  49159543 tagcacttgggtgacattgtggttggtgacatt 49159511  T

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Target: scaffold1315 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 1820 - 1865
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  1820 cttgggtgacattgtggttggtgacattgatcaaccacaatatcac 1865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 251 - 206
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  251 cttgggtgacattgtggttggtgacattgatcaaccacaatatcac 206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 16193880 - 16193835
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||    
T  16193880 cttgggtgacattgtggttggtgacattggtcaaccacaatgtcac 16193835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 369570 - 369525
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||    
T  369570 cttgagtgacattgtggttggtgacattgaccaaccacaatgtcac 369525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 2543894 - 2543849
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||||||||||||||||||||||||||   |||||||||||||||    
T  2543894 cttgggtgacattgtggttggtgacattggccaaccacaatgtcac 2543849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 369468 - 369439
Alignment:
Q  192 tcatcaaccacaatgtcacccaagtgctac 221  Q
    ||||||||||||||||||||||||||||||    
T  369468 tcatcaaccacaatgtcacccaagtgctac 369439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 28581739 - 28581783
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgtca 209  Q
    ||||| ||||||||||||||||||||||   ||||||||||||||    
T  28581739 cttggctgacattgtggttggtgacattggccaaccacaatgtca 28581783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 10449455 - 10449500
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  10449455 cttgggtgacattgtggttggtgacattgaccaaccacaatgtcac 10449500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 28739469 - 28739419
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  28739469 tagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 28739419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 45085927 - 45085979
Alignment:
Q  157 ggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||||| ||||  |||||||||||||||||||||||| |||||||||||||||    
T  45085927 ggatagcacttgattgacattgtggttggtgacattca-caaccacaatgtcac 45085979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 44938792 - 44938847
Alignment:
Q  155 acggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||||| | ||||||||||||||||||| |||||||| | |||||| ||||||||    
T  44938792 acggataacacttgggtgacattgtggttagtgacattgaccaaccagaatgtcac 44938847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 15928081 - 15928122
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgt 207  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  15928081 cttgggtgacattgtgattggtgacatt-atcaaccacaatgt 15928122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 6539696 - 6539725
Alignment:
Q  192 tcatcaaccacaatgtcacccaagtgctac 221  Q
    ||||||||||||||||||||||||||||||    
T  6539696 tcatcaaccacaatgtcacccaagtgctac 6539725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 50754735 - 50754776
Alignment:
Q  169 ggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  50754735 ggtgacattgtggttggtgacattggccaaccacaatgtcac 50754776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 28810102 - 28810066
Alignment:
Q  174 cattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||||||||||||||  ||||||||||||||||    
T  28810102 cattgtggttggtgacattggtcaaccacaatgtcac 28810066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 896261 - 896321
Alignment:
Q  150 taacaacggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||| |||||| | ||||||||| |||||||||||||| ||| |||||||||||||||||    
T  896261 taacatcggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgtcac 896321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 12605701 - 12605661
Alignment:
Q  170 gtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  12605701 gtgacattgtggttggtgacattggtcaaccacaatgtcac 12605661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 5215721 - 5215676
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||||||||||||||| |||||||  ||||||||||| ||||    
T  5215721 cttgggtgacattgtggttgatgacattggtcaaccacaatatcac 5215676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 42772108 - 42772071
Alignment:
Q  173 acattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||||||||||||||| | |||||||||||||||    
T  42772108 acattgtggttggtgacattgaccaaccacaatgtcac 42772071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 19417438 - 19417470
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacatt 192  Q
    |||| ||||||||||||||||||||||||||||    
T  19417438 tagcacttgggtgacattgtggttggtgacatt 19417470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 29385450 - 29385418
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacatt 192  Q
    |||| ||||||||||||||||||||||||||||    
T  29385450 tagcacttgggtgacattgtggttggtgacatt 29385418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 7755328 - 7755388
Alignment:
Q  150 taacaacggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||| |||| |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  7755328 taactacgggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 7755388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 13421840 - 13421801
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaa 204  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  13421840 cttgggtgacattgtggttggtgacattgaccaaccacaa 13421801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 5095749 - 5095798
Alignment:
Q  157 ggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatg 206  Q
    ||||||| ||||||||| ||||||||||||||||||   |||||||||||    
T  5095749 ggatagcacttgggtgatattgtggttggtgacattagacaaccacaatg 5095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 15562212 - 15562256
Alignment:
Q  166 ttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||||||||||||||||| |||||||   |||||||||||||||    
T  15562212 ttgggtgacattgtggttgatgacattggccaaccacaatgtcac 15562256  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 39819056 - 39819088
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacatt 192  Q
    |||| ||||||||||||||||||||||||||||    
T  39819056 tagcacttgggtgacattgtggttggtgacatt 39819088  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 30023694 - 30023651
Alignment:
Q  167 tgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcac 30023651  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 53261101 - 53261142
Alignment:
Q  169 ggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  53261101 ggtgacattgtggttggtgacattgaccaaccacaatgtcac 53261142  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 54223561 - 54223605
Alignment:
Q  166 ttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||| |||||||||||||||||||||| | |||||||||||||||    
T  54223561 ttggatgacattgtggttggtgacattgaccaaccacaatgtcac 54223605  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 11392353 - 11392303
Alignment:
Q  170 gtgacattgtggttggtgacattcatcaaccacaatgtcacccaagtgcta 220  Q
    ||||||||||||| ||  |  ||||||||||||||||||||||||||||||    
T  11392353 gtgacattgtggtaggccaatttcatcaaccacaatgtcacccaagtgcta 11392303  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 46321359 - 46321397
Alignment:
Q  172 gacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  46321359 gacattgtggttggtgacattgatcgaccacaatgtcac 46321397  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 42756337 - 42756296
Alignment:
Q  165 cttgggtgacattgtggttggtgacattcatcaaccacaatg 206  Q
    |||| |||||||||||||||||||| || |||||||||||||    
T  42756337 cttgagtgacattgtggttggtgactttgatcaaccacaatg 42756296  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 30023485 - 30023537
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcaccc 212  Q
    |||| ||| ||||| ||||||||||||||||||  ||||||| ||||||||||    
T  30023485 tagcacttaggtgatattgtggttggtgacattggtcaaccataatgtcaccc 30023537  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 31846956 - 31846924
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacatt 192  Q
    |||| ||||||||||||||||||||||||||||    
T  31846956 tagcacttgggtgacattgtggttggtgacatt 31846924  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 7211862 - 7211912
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  7211862 tagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 7211912  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 17272701 - 17272751
Alignment:
Q  160 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  17272701 tagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 17272751  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 32315708 - 32315759
Alignment:
Q  159 atagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 210  Q
    ||||| |||| |||||||||||||||||||||||   |||||||||||||||    
T  32315708 atagcacttgcgtgacattgtggttggtgacattggccaaccacaatgtcac 32315759  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 33763466 - 33763505
Alignment:
Q  166 ttgggtgacattgtggttggtgacattcatcaaccacaat 205  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  33763466 ttgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

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