View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_35 (Length: 366)
Name: NF19445_low_35
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 24012517 - 24012164
Alignment:
| Q |
1 |
catatgtaaacaaataaatatactagcaacaacaaggatgacatgaatccgattctaaacatgtattcctggtatatgttactg---gctaaaatagatt |
97 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
24012517 |
catatgtaaacaaataaatatgctagcaacaacaaggatgacatgaatccaattctaaacatgtattcctggtatatgttattaccagctaaaatagatt |
24012418 |
T |
|
| Q |
98 |
gtgtgaaatactgaaatattttaatcgagattataaaaactgaaatgtttaggaaactattttctttgttgatgaaaactttgactaaattccaactttt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24012417 |
gtgtgaaatactgaaatattttaatcgagattataaaaactgaaatgtttaggaaactattttctttgttgatgaaaactttgactaaattccaactttt |
24012318 |
T |
|
| Q |
198 |
aaatgataaaatttaaatactgcaacagtaacctcctgctgaatgcaaactaaattttaatgtttatgccacctgacatttgtgtgctataatcatctaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24012317 |
aaatgataaaatttaaatactgcaacagtaacctcctgctgaatgcaaactaaattttaatgtttatgccacctgacatttgtgtgctataatcatctaa |
24012218 |
T |
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| Q |
298 |
attgaagtcaaaacaaatattctttaagacctatatgaaatcagtagaagaaat |
351 |
Q |
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| T |
24012217 |
attgaagtcaaaacaaatattctttaagacctatatgaaatcagtagaagaaat |
24012164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 23997341 - 23996983
Alignment:
| Q |
1 |
catatgtaaacaaataaatatactagcaacaacaaggatgacatgaatccgattctaaacatgtattcctggtatatgttactggctaaaatagattgtg |
100 |
Q |
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|||||||| |||||||||||| |||| | | |||||||||||||||| |||||||| ||||||||||| | | || ||| ||||||||||||||| |
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| T |
23997341 |
catatgtacacaaataaatatgttagctagtgctaggatgacatgaatccaattctaaatatgtattcctgttgcaagtcactagctaaaatagattgtt |
23997242 |
T |
|
| Q |
101 |
tgaaatactgaaatattttaatcgagattataaaaactgaaatgtttaggaaactattttctttgttgatgaaaactttgactaaattccaacttttaaa |
200 |
Q |
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|||||||||||||||| |||||| |||||| ||| ||||||||||||| |||| ||||||||||||| |||||||||||||||||||| ||||| ||||| |
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| T |
23997241 |
tgaaatactgaaatatgttaatctagattaaaaatactgaaatgtttaagaaaatattttctttgttaatgaaaactttgactaaatttcaactcttaaa |
23997142 |
T |
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| Q |
201 |
tgataaaatttaaatactgcaacagtaacctcctgctgaatgcaaact-aaattttaatgtttatg----ccacc-----tgacatttgtgtgctataat |
290 |
Q |
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|||||||||| ||||||| |||||||| |||||| || | ||| |||| ||||||||||| ||| | ||||| ||| |||||||||||||| |
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| T |
23997141 |
tgataaaattgaaatactacaacagtatcctcctccttattgcgaactaaaattttaatgcttaggtcgcccaccataataaacacttgtgtgctataat |
23997042 |
T |
|
| Q |
291 |
catctaaattgaagtcaaaacaaatattctttaagacctatatgaaatcagtagaagaa |
349 |
Q |
| |
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|||||||| ||||| || |||||| ||||||||| || |||||||| | ||||||||| |
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|
| T |
23997041 |
catctaaaatgaagacacaacaaacattctttaaaactaatatgaaagctgtagaagaa |
23996983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 15843032 - 15843089
Alignment:
| Q |
5 |
tgtaaacaaataaatatactagcaacaacaaggatgacatgaatccgattctaaacat |
62 |
Q |
| |
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||||||||||||||||| |||| ||||| | |||| ||||||||||||||||||||| |
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|
| T |
15843032 |
tgtaaacaaataaatatgttagctacaaccacgatgccatgaatccgattctaaacat |
15843089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 15860141 - 15860198
Alignment:
| Q |
5 |
tgtaaacaaataaatatactagcaacaacaaggatgacatgaatccgattctaaacat |
62 |
Q |
| |
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||||||||||||||||| |||| ||||| | |||| ||||||||||||||||||||| |
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| T |
15860141 |
tgtaaacaaataaatatgttagctacaaccacgatgccatgaatccgattctaaacat |
15860198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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