View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19445_low_37 (Length: 341)
Name: NF19445_low_37
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_37 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 38300160 - 38300483
Alignment:
| Q |
1 |
tgtaaaattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaatgagtgtattgcaaaggttggtggtgttgattgttccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
38300160 |
tgtaaaattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaaggagtgtattgcaaaggttggtggtgttgattgttccg |
38300259 |
T |
|
| Q |
101 |
ttcgcttgcatctggacacgcctaaaagagtgaacacaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38300260 |
ttcgcttgcatctggacacgcctaaaagagtgaactcaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgta |
38300359 |
T |
|
| Q |
201 |
tgatgatagttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38300360 |
tgatgatagttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgatt |
38300459 |
T |
|
| Q |
301 |
aatgccacaacacatcctacttcc |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38300460 |
aatgccacaacacatcctacttcc |
38300483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 324
Target Start/End: Original strand, 38325658 - 38325978
Alignment:
| Q |
4 |
aaaattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaatgagtgtattgcaaaggttggtggtgttgattgttccgttc |
103 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| || || |||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
38325658 |
aaaattagagagagcatcatgtttgtgaggcattcaaagagtagaagggagaaatttaaggaatgcattgaaaaggttggtggtgtcgatagttccgttc |
38325757 |
T |
|
| Q |
104 |
gcttgcatctggacacgcctaaaagagtgaacacaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatga |
203 |
Q |
| |
|
||||||||| |||| || ||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38325758 |
gcttgcatcaggactcgtctatgagtctgaactcaacttatttgatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatga |
38325857 |
T |
|
| Q |
204 |
tgatagttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgattaat |
303 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
38325858 |
ggataattatgagttatgtccttcggtagaagagtagaaaagagtagaaaagatctgtgcattcttgttgcctttttgtgaaactgctaacatgattaat |
38325957 |
T |
|
| Q |
304 |
gccacaacacatcctacttcc |
324 |
Q |
| |
|
| |||||| |||||||||||| |
|
|
| T |
38325958 |
gacacaacgcatcctacttcc |
38325978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 38320908 - 38321227
Alignment:
| Q |
4 |
aaaattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaatgagtgtattgcaaaggttggtggtgttgattgttccgttc |
103 |
Q |
| |
|
||||||||| | |||||| ||||| | ||| ||||||||||| ||||| |||||||||| ||||| ||| ||||||||||||||||||| |||| |||| |
|
|
| T |
38320908 |
aaaattagacagagcatcttgttttttagggattcaaagagtcgaaggcaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagttc |
38321007 |
T |
|
| Q |
104 |
gcttgcatctggacacgcctaaaagagtgaacacaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatga |
203 |
Q |
| |
|
||||||||||||||| | ||| | |||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
38321008 |
gcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatga |
38321107 |
T |
|
| Q |
204 |
tgatagttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgattaat |
303 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
38321108 |
tgataattatgagttatgtccttcggtagaagaatggaaaagagttgaaaagatttgtgtgttcttgttgcctttaagggaaactgctaacatgattaat |
38321207 |
T |
|
| Q |
304 |
gccacaacacatcctacttc |
323 |
Q |
| |
|
| |||| ||||||||||||| |
|
|
| T |
38321208 |
ggcacagcacatcctacttc |
38321227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 38308813 - 38309130
Alignment:
| Q |
7 |
attagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaatgagtgtattgcaaaggttggtggtgttgattgttccgttcgct |
106 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||| |||| ||||| | |
|
|
| T |
38308813 |
attagaaagagcatcatgtttgtgaggcgatcaaagagtcacagggaaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgttcgtt |
38308912 |
T |
|
| Q |
107 |
tgcatctggacacgcctaaaagagtgaacacaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatgatga |
206 |
Q |
| |
|
||||||| |||| | ||| ||||||||| ||||||||| |||||| |||||||||||||||||| || || ||||||||||||||||||||||| || |
|
|
| T |
38308913 |
tgcatctagacatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcttgcatttgaaagtcttcacttgtatgacga |
38309012 |
T |
|
| Q |
207 |
tagttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgattaatgcc |
306 |
Q |
| |
|
| |||||| | ||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
38309013 |
tggttatgattcatgtcctgcggcagaagagtggaaaagagtagaaaagatttgtgcattcttgttgccttttagcgaaactgccaacacgataaatggt |
38309112 |
T |
|
| Q |
307 |
acaacacatcctacttcc |
324 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
38309113 |
gcaacacatcgtacttcc |
38309130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 38313401 - 38313724
Alignment:
| Q |
1 |
tgtaaaattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaatgagtgtattgcaaaggttggtggtgttgattgttccg |
100 |
Q |
| |
|
||||| || ||||| ||||| ||||||| |||||||| |||||| || || || ||||| ||||| ||| ||||||||||||||||||| |||| | |
|
|
| T |
38313401 |
tgtaagatcagagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcgg |
38313500 |
T |
|
| Q |
101 |
ttcgcttgcatctggacacgcctaaaagagtgaacacaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgta |
200 |
Q |
| |
|
||||||||||||| || | | ||| ||||||||| ||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
38313501 |
ttcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgta |
38313600 |
T |
|
| Q |
201 |
tgatgatagttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgatt |
300 |
Q |
| |
|
||||||| ||||| | ||||||| ||| |||||| |||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
38313601 |
tgatgatgattatgattcatgtcctgcggcagaagactggaaaagagtagaaaagatttgtgcattcttgttacctttttgtgaaactgccaacatgatt |
38313700 |
T |
|
| Q |
301 |
aatgccacaacacatcctacttcc |
324 |
Q |
| |
|
|||| | ||||||||||||||||| |
|
|
| T |
38313701 |
aatggcgcaacacatcctacttcc |
38313724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 6 - 323
Target Start/End: Original strand, 38316815 - 38317132
Alignment:
| Q |
6 |
aattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaatgagtgtattgcaaaggttggtggtgttgattgttccgttcgc |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||| ||||||| | | ||||| ||||||||| ||||| |||| ||||||||||||||||||| |||| ||| || |
|
|
| T |
38316815 |
aattcgagacagcatcatgtttgtgaggaattcaaaaaatagaaggacaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgtttgc |
38316914 |
T |
|
| Q |
106 |
ttgcatctggacacgcctaaaagagtgaacacaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatgatg |
205 |
Q |
| |
|
|||||||||||| | ||| || ||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
38316915 |
ctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctcttaaatatcggcatgtatttgaaagttttcacttgtatgatg |
38317014 |
T |
|
| Q |
206 |
atagttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgattaatgc |
305 |
Q |
| |
|
||| ||| ||||||||||| | | | |||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
38317015 |
ataattaccagttatgtcctttagcacatgagtggaaaagagttgaaaagatttgtgcgttcttgctgcctttttatgaaactgccaacatgattaatga |
38317114 |
T |
|
| Q |
306 |
cacaacacatcctacttc |
323 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
38317115 |
cacaacgcatcctacttc |
38317132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 38306081 - 38306392
Alignment:
| Q |
3 |
taaaattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaatgagtgtattgcaaaggttggtggtgttgattgttccgtt |
102 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||||||||| ||||| |||||||||| ||||| ||| ||||||||||||| |||| |||| ||| |
|
|
| T |
38306081 |
taaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcgttgaaaaggttggtggtattgacagttcagtt |
38306180 |
T |
|
| Q |
103 |
cgcttgcatctggacacgcctaaaagagtgaacacaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatg |
202 |
Q |
| |
|
||||||||| |||||| | ||| | |||||| ||||||||| ||||| || |||||||||||||||| | ||||||||||||| |||||||||||| |
|
|
| T |
38306181 |
cgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatg |
38306280 |
T |
|
| Q |
203 |
atgatagttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgattaa |
302 |
Q |
| |
|
||| | |||||| | |||||||| || |||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||| || |
|
|
| T |
38306281 |
atggtgattatgtctcgtgtccttc----------tgcaaaagagtggaaaagatttgtgcattcatgttgccttttcgtgaaactgccaacatgatcaa |
38306370 |
T |
|
| Q |
303 |
tgccacaacacatcctacttcc |
324 |
Q |
| |
|
|| |||||||||| |||||| |
|
|
| T |
38306371 |
tggtgcaacacatcccacttcc |
38306392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 324
Target Start/End: Complemental strand, 38850526 - 38850212
Alignment:
| Q |
10 |
agagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaatgagtgtattgcaaaggttggtggtgttgattgttccgttcgcttgc |
109 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| | |||||||||||||| ||||| ||| ||||||||||||||||||| |||| |||| ||| | |
|
|
| T |
38850526 |
agagagagtatcatgtttgtgaggcattcaaagagtaggagggaaaaatttaaggagtgctttgaaaaggttggtggtgttgatagttcggttcacttac |
38850427 |
T |
|
| Q |
110 |
atctggacacgcctaaaagagtgaacacaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatgatgatag |
209 |
Q |
| |
|
|| |||| | ||| || ||| |||||||| |||||||||| ||||||||||| ||| ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
38850426 |
atttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataccggtgtgcgtttgaaagttttcacttgtatgatgatag |
38850327 |
T |
|
| Q |
210 |
ttatgtgttatgtccttcggtagaagagtggaaaagagtacaaaagatttgtgtgttcttgttgccttttagtgaaactgccaacatgattaatgccaca |
309 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
38850326 |
ttatgatttatgtccttcggcggaagagtggaaaagagtagaaaagatttgtgcattcctgttgcctttttgtgaaactgccaacatgattaatagcaca |
38850227 |
T |
|
| Q |
310 |
acacatcctacttcc |
324 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38850226 |
acacatcctacttcc |
38850212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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