View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19445_low_39 (Length: 336)
Name: NF19445_low_39
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 36949836 - 36950140
Alignment:
| Q |
14 |
atatggtaatggtgatcttcttaaagcagctgattcaagattatatggtgaatttaatgagaaggaagtagagaggttaatgatagttggactttggtgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949836 |
atatggtaatggtgatcttcttaaagcagctgattcaagattatatggtgaatttaatgagaaggaagtagagaggttaatgatagttggactttggtgt |
36949935 |
T |
|
| Q |
114 |
actcatacagatcatcttcagaggcctgtgattaggcaagttgttcaagtgcttaactttgatgctccattacctaatcttccattacagatgaatgcat |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949936 |
actcatacagatcatcttcagaggcctatgattaggcaagttgttcaagtgcttaactttgatgctccattacctaatcttccattacagatgaatgcat |
36950035 |
T |
|
| Q |
214 |
ctacctataatacatctttcaattctgtgtattctaaatctaagatttctggttttgaaaataaccaaactgggacctcaacttcaagtgatagcactat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36950036 |
ctacctataatacatctttcaattctgtgtattctaaatctaagatttctggttttgaaaataaccaaactgggacctcaacttcaagtgatagcactat |
36950135 |
T |
|
| Q |
314 |
cacag |
318 |
Q |
| |
|
||||| |
|
|
| T |
36950136 |
cacag |
36950140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 36959970 - 36960274
Alignment:
| Q |
14 |
atatggtaatggtgatcttcttaaagcagctgattcaagattatatggtgaatttaatgagaaggaagtagagaggttaatgatagttggactttggtgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36959970 |
atatggtaatggtgatcttcttaaagcagctgattcaagattatatggtgaatttaatgagaaggaagtagagaggttaatgatagttggactttggtgt |
36960069 |
T |
|
| Q |
114 |
actcatacagatcatcttcagaggcctgtgattaggcaagttgttcaagtgcttaactttgatgctccattacctaatcttccattacagatgaatgcat |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960070 |
actcatacagatcatcttcagaggcctatgattaggcaagttgttcaagtgcttaactttgatgctccattacctaatcttccattacagatgaatgcat |
36960169 |
T |
|
| Q |
214 |
ctacctataatacatctttcaattctgtgtattctaaatctaagatttctggttttgaaaataaccaaactgggacctcaacttcaagtgatagcactat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960170 |
ctacctataatacatctttcaattctgtgtattctaaatctaagatttctggttttgaaaataaccaaactgggacctcaacttcaagtgatagcactat |
36960269 |
T |
|
| Q |
314 |
cacag |
318 |
Q |
| |
|
||||| |
|
|
| T |
36960270 |
cacag |
36960274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University