View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_40 (Length: 321)
Name: NF19445_low_40
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_40 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 27846509 - 27846810
Alignment:
| Q |
13 |
aatatcaaattacaggttaggttagaataagagtttacatggttgtttttcagaatttgcctatatattatagggttaatttgaaaaattaaagtaaagt |
112 |
Q |
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| T |
27846509 |
aatatcaaattacaagttaggttagaataagagtttacacagttgttttccagactttgtcaatat--tatagggttaatttgaaaaattaaa-----gt |
27846601 |
T |
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| Q |
113 |
gtgtaagagaattataaattgaagtatgtgaaaaactcataagtgtaataatattatgacataagtataaaatttcaagcttagaagtaacatatctttt |
212 |
Q |
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| T |
27846602 |
gtgtaagagaattataaattgaagtatgtgaaaaactcatgagtgtaataatattatgacataagtataaaatttcaagcttagaagtaacatatctttt |
27846701 |
T |
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| Q |
213 |
gaacttatttagtaacgatattctgataaggttggaaagataatgtgatatgcctaaattgaaggacatagtgatatctccaaaattatgagagaacaag |
312 |
Q |
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| T |
27846702 |
gaacttatttagtaaagatattctcataaggttggaaagataatgtgatatgcctaaattgaaggacatagtgatatctccaaaattatgagagaacaag |
27846801 |
T |
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| Q |
313 |
aaaaagaaa |
321 |
Q |
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| T |
27846802 |
aaaaagaaa |
27846810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 107 - 321
Target Start/End: Original strand, 27854642 - 27854861
Alignment:
| Q |
107 |
taaagtgtgtaagagaattataaattgaagtatgtgaaaaactcataagtgtaataatattatgacataagtataaaatttcaagcttagaagtaacata |
206 |
Q |
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| T |
27854642 |
taaagtgtgtaagagaattataaattgaagtatgtgaaaaactca-cagtgtaataatattatga-------ataaaattacaggcttagaagtaatata |
27854733 |
T |
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| Q |
207 |
------tcttttgaacttatttagtaacgatattctga-------taaggttggaaagataatgtgatatgcctaaattgaaggacatagtgatatctcc |
293 |
Q |
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| T |
27854734 |
ataactacttttgaacttatttagtaaagatattttgataggcggtaaggttgaaaagataatgtgatatgcctgaattgaagtatatggtgatatctcc |
27854833 |
T |
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| Q |
294 |
aaaattatgagagaacaagaaaaagaaa |
321 |
Q |
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| T |
27854834 |
aaaattaagagagaacgcgaaaaagaaa |
27854861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 296
Target Start/End: Original strand, 27834903 - 27835098
Alignment:
| Q |
114 |
tgtaagagaattataaattgaagtatgtgaaaaactcataagtgtaataatattatgacataagtataaaatttcaagcttagaagtaacata------t |
207 |
Q |
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|||| ||||||||||| ||||||| || |||||||| |||||||| |||||||||| |||||||||||||||| | ||||| |||||||||| |
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| T |
27834903 |
tgtaggagaattataatttgaagtgtgagaaaaactgataagtgttataatattataacataagtataaaattaccggcttaaaagtaacataataacta |
27835002 |
T |
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| Q |
208 |
cttttgaacttatttagtaacgatattctga-------taaggttggaaagataatgtgatatgcctaaattgaaggacatagtgatatctccaaa |
296 |
Q |
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| T |
27835003 |
attttgaacttatttggtaaagatattctaacaggcagtaaggttgaaaaaataatatgatatgcctgaattgaaggacaatgtgatatctccaaa |
27835098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 29484838 - 29484767
Alignment:
| Q |
114 |
tgtaagagaattataaattgaagtatgtgaaaaactcataagtgtaataatattatgacataagtataaaatt |
186 |
Q |
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| T |
29484838 |
tgtaagagaaatataaattgaagtatgagaaaaa-tcataaatgtaacaacattatgatataaatataaaatt |
29484767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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