View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_46 (Length: 306)
Name: NF19445_low_46
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4141860 - 4142089
Alignment:
| Q |
1 |
aattcattgcatccacaatttgttcccaactgcaatgcctttgatcactgcaacaagtcttcttttttagaaattttggaggcaaggaaagtgagcttta |
100 |
Q |
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| T |
4141860 |
aattcattgcatccacaatttgtccccaactgcaatgcctttgatcactgcaataagtcttctcttttagaaattttggaggcaaggaaagtgagcttta |
4141959 |
T |
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| Q |
101 |
cagaattaagcagctccaaatgatcaaagaattacacctgtgtcaaaggggtttttgttctaagccaacttcatttttaatgatctaacactagaaatcc |
200 |
Q |
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| T |
4141960 |
cagaaataagcagctccaaatgatcaaagaattacac---------------ttctgttctaagccagcttcattttgaatgatctagcactagaaatct |
4142044 |
T |
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| Q |
201 |
gaacaagagctatttgttgca--ccgagtttctgctgtttttatt |
243 |
Q |
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| T |
4142045 |
gaacaagagctattcgttgcactcggagtttctgctgcttttatt |
4142089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 3854797 - 3854654
Alignment:
| Q |
1 |
aattcattgcatccacaatttgttcccaactgcaatgcctttgatcactgcaacaagtcttcttttttagaaattttggaggcaaggaaagtgagcttta |
100 |
Q |
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| T |
3854797 |
aattcattgcatccacaatttgtccccaactgcaatgtctttgataactgcaacaagtcttcttttttagaaattttggaggcaaggaaagtgagctttg |
3854698 |
T |
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| Q |
101 |
cagaattaagcagctccaaatgatcaaagaattacacctgtgtc |
144 |
Q |
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| T |
3854697 |
cagaaataagcagctccaaatgatcaaagaattacacttgtgtc |
3854654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 3854525 - 3854468
Alignment:
| Q |
239 |
ttattagttttagcatgctcagagtttctgttgctgaatgattctagcatgctactag |
296 |
Q |
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| T |
3854525 |
ttattggttttagcatgctcagagtttctgttgctgaatggttctagcatgctactag |
3854468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 3854645 - 3854580
Alignment:
| Q |
194 |
gaaatccgaacaagagctatttgttgca--ccgagtttctgctgtttttattagttttagcatgct |
257 |
Q |
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| T |
3854645 |
gaaatccgaacaagagctatttgttgcagtcagagtttctgctgcttttattggttttagcatgct |
3854580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 25126557 - 25126485
Alignment:
| Q |
109 |
agcagctccaaatgatcaaagaattacacctgtgtcaaaggggtttttgttctaagccaacttcatttttaatg |
182 |
Q |
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| T |
25126557 |
agcagcgccaaatgatcaaagaattattcttgtttcaaagggg-ttctgttctacgccaacctcattttgaatg |
25126485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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