View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_47 (Length: 301)
Name: NF19445_low_47
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 152 - 291
Target Start/End: Original strand, 1760083 - 1760222
Alignment:
| Q |
152 |
gtatacaaagcacaaaatatttaggtaattaaccaagtggttggatgaaatacttaataaagatttgagttacaattaaattgttcaaatcactcgagtt |
251 |
Q |
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| T |
1760083 |
gtatacaaagcacaaaatatttaggtaattaaccaagtggttggatgaaatacttaataaagctttgagttacaattaaattgttcaagtcactcgagtt |
1760182 |
T |
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| Q |
252 |
cgatccgtagatgaaataattttttcatattttatatatt |
291 |
Q |
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| T |
1760183 |
cgatccgtagatgaaataattttttcatattttatatatt |
1760222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 1759937 - 1760017
Alignment:
| Q |
2 |
tgaaggaaatgcagaaacttcctactttggagaatttaattccattctgactttgaaaagttatgcccattctgtcttttt |
82 |
Q |
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| T |
1759937 |
tgaaggaaatgcagaaacttcctactttggagaatttaattccattctgactttgaaaagttatgcccattctgtcttttt |
1760017 |
T |
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