View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_48 (Length: 286)
Name: NF19445_low_48
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 11616376 - 11616635
Alignment:
| Q |
1 |
atatattttattttgtatttatgataattgtaaccactgtaatatttgataagattaatttgataaaattatcataaacaaatgtgacactcataaatga |
100 |
Q |
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| T |
11616376 |
atatattttactttgtatttatgataattgtaaccacagtaatatttgataagattaatttgataaaattgtcataaacaaatgtgacactcataaatga |
11616475 |
T |
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| Q |
101 |
cctgatgtgataattcattagcattttctacnnnnnnnnnnnnnnggtcacgtatacctttcagaagaattgacttttatcatggtgtcaaaacttgttt |
200 |
Q |
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| T |
11616476 |
cctgatgtgataattcattagcattttctacaaaaaaaa-------gtcacatatacctttcagaaaaattgacctttatcttcgtgtcaaaacttgttt |
11616568 |
T |
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| Q |
201 |
acctgaaaagttttaacaattctaattaagaatgaaccnnnnnnncttacattatcaatatgtataa |
267 |
Q |
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||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
11616569 |
acctgaaaagttttaactattctaattaagtatgaaccattttttcttacattatcaataagtataa |
11616635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 11633860 - 11633600
Alignment:
| Q |
1 |
atatattttattttgtatttatgataattgtaaccactgtaatatttgataagattaatttgataaaattatcataaacaaatgtgacactcataaatga |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11633860 |
atatattttactttgtatttatgataattgtaaccacaataatatttgataagattaatttgataaaattgtcataaacaaatgtgacactcataaatga |
11633761 |
T |
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| Q |
101 |
cctgatgtgataattcattagcattttctacnnnnnnnnnnnnnnggtcacgtatacctttcagaagaattgacttttatcatggtgtcaaaacttgttt |
200 |
Q |
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| T |
11633760 |
cctgatgtgataattcattagcattttctacaaaaaaaaa------gtcacatatacctttcagaaaaattgacctttatcttggtgtcaaaacttgttt |
11633667 |
T |
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| Q |
201 |
acctgaaaagttttaacaattctaattaagaatgaaccnnnnnnncttacattatcaatatgtataa |
267 |
Q |
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||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
11633666 |
acctgaaaagttttaactattctaattaagtatgaaccattttttcttacattatcaataagtataa |
11633600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11842575 - 11842607
Alignment:
| Q |
1 |
atatattttattttgtatttatgataattgtaa |
33 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
11842575 |
atatattttattttgcatttatgataattgtaa |
11842607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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