View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19445_low_52 (Length: 280)

Name: NF19445_low_52
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19445_low_52
NF19445_low_52
[»] chr1 (1 HSPs)
chr1 (1-280)||(44964991-44965270)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 44965270 - 44964991
Alignment:
Q  1 taaagattctgaaactcggtgctgatcttagaagtgaaatgggtgattgaggtttagaaatgggttcaattggaagcacttttctttttgagattggttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44965270 taaagattctgaaactcggtgctgatcttagaagtgaaatgggtgattgaggtttagaaatgggttcaattggaagcacttttctttttgagattggttc 44965171  T
Q  101 gtttggagacataggaagtgttgttttttgaggaacattagtttcagttttggttttgacatgttggtcgtcgctcatggtaagttctaagtcgaagaat 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44965170 gtttggagacataggaagtgttgttttttgaggaacattattttcagttttggttttgacatgttggtcgtcgctcatggtaagttctaagtcgaagaat 44965071  T
Q  201 gagtcatcttcgtctgattcactgtctgtttctacaacaagatgaggaggaacagtgatgttggaggttgttgtgttgtt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44965070 gagtcatcttcgtctgattcactgtctgtttctacaacaagatgaggaggaacagtgatgttggaggttgttgtgttgtt 44964991  T

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