View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_53 (Length: 278)
Name: NF19445_low_53
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 45230926 - 45231164
Alignment:
| Q |
16 |
atcatttagaatgccatgtcacagggctttaataatttctagacaaatcatgaattgagctgaatagtacaagattacagttaccgtcgattacacccat |
115 |
Q |
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| T |
45230926 |
atcatttagaatgccatgtcacagggctttaataatttctagacaaatcatgaattgagctgaatagtacaagataatagttaccgtcgattacactcat |
45231025 |
T |
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| Q |
116 |
atggcgggaaagattggtgaaaatgattcctggatgaagagaattcacaatgatatccacaccatcatcctgatcaagatgtaacaagtgatgttataaa |
215 |
Q |
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| T |
45231026 |
atggcgggaaagattggtgagaatgattcctggatgaagagaattcacaatgatatccaccccatcatcctgatcaagatgtaacaagtaatgttat--a |
45231123 |
T |
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| Q |
216 |
tatatcaaaacaaagagccacttttacacacaatacaaaga |
256 |
Q |
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| T |
45231124 |
tatatcaaaacaaagagtcacttttacacacaaaacaaaga |
45231164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 45246398 - 45246636
Alignment:
| Q |
16 |
atcatttagaatgccatgtcacagggctttaataatttctagacaaatcatgaattgagctgaatagtacaagattacagttaccgtcgattacacccat |
115 |
Q |
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| T |
45246398 |
atcatttagaatgccatgtcacagggctttaataatttctagacaaatcatgaattgagatgaatagtacaagataatagttaccgtggattacacccat |
45246497 |
T |
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| Q |
116 |
atggcgggaaagattggtgaaaatgattcctggatgaagagaattcacaatgatatccacaccatcatcctgatcaagatgtaacaagtgatgttataaa |
215 |
Q |
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| T |
45246498 |
atggcgggaaagattggtgagaatgattcctggatgaagagaattcacaatgatatccaccccatcatcctgatcaagatgtaacaagtaatgttat--a |
45246595 |
T |
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| Q |
216 |
tatatcaaaacaaagagccacttttacacacaatacaaaga |
256 |
Q |
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| T |
45246596 |
tatatcaaaacaaagagtcacttttacacacaaaacaaaga |
45246636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 45210576 - 45210698
Alignment:
| Q |
94 |
agttaccgtcgattacacccatatggcgggaaagattggtgaaaatgattcctggatgaagagaattcacaatgatatccacaccatcatcctgatcaag |
193 |
Q |
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| T |
45210576 |
agttaccgttgattgcactgttatgacggtaaagattggtggcaatgcctcctggatgaagagaatttgcaatgatattcacaccatcatcctgatcaaa |
45210675 |
T |
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| Q |
194 |
atgtaacaagtgatgttataaat |
216 |
Q |
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| T |
45210676 |
atgcaacaagtaatgttataaat |
45210698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 45204587 - 45204668
Alignment:
| Q |
115 |
tatggcgggaaagattggtgaaaatgattcctggatgaagagaattcacaatgatatccacaccatcatcctgatcaagatg |
196 |
Q |
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|||| ||| |||||||||||| ||| ||||||||||||||||||| | | |||||||| ||||| ||||||||| |||| |
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| T |
45204587 |
tatgtcggaaaagattggtgacaattgttcctggatgaagagaatttgaagtaatatccactccatcttcctgatcatgatg |
45204668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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