View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_55 (Length: 268)
Name: NF19445_low_55
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_55 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 27273396 - 27273131
Alignment:
| Q |
1 |
tctttttctttgctttcttcttctactatgagactattttaaatttcctaaatttagattggatttttcatctaaatgtccttttcaattcaaactgttc |
100 |
Q |
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| T |
27273396 |
tctttttctttgctttcttcttctactatgagactattttaaatttcctgaatttagattggatttttcatctaaatgtccttttcaattcaaactgttc |
27273297 |
T |
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| Q |
101 |
aattgtagtattcattaatgcacannnnnnnnatcttattttgttaacctcatgaatcttcttttgnnnnnnnnntcacatgagtatgctttaacagggt |
200 |
Q |
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| T |
27273296 |
aattgtagtattcattaatgcac-ttttttttatcttattttgttaacctcatgaatcttcttttg-aaaaaaaatcacatgagtatgctttaacagggt |
27273199 |
T |
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| Q |
201 |
gatttatggcagtttcactctctttctattttacaattgctaatgagaattgaggattgagcggctct |
268 |
Q |
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| T |
27273198 |
gatttatggcagtttcactctctttctattttacaattgctaatgagaattgaggattgagcggctct |
27273131 |
T |
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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 13550648 - 13550395
Alignment:
| Q |
1 |
tctttttctttgctttcttcttctactatgagactattttaaatttcctaaatttagattgga-tttttcatctaaatgt-ccttttcaattcaaactgt |
98 |
Q |
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| T |
13550648 |
tctttttctttgctttcttcttctactatgagactattttaaatttccaaaatttagatttgatttttttatctaaatgtcccttttcaattcaaa---- |
13550553 |
T |
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| Q |
99 |
tcaattgtagtattcattaatgcacannnnnnnnatcttattttgttaacctcatgaatcttcttttgnnnnnnnnntcacatgagtatgctttaacagg |
198 |
Q |
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| T |
13550552 |
-caggtgcagtatccattaatgcac----tttttatcttattttattaacttcatgaatcttctttt--caaaaaaatcacatgagtatgttttaacagg |
13550460 |
T |
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| Q |
199 |
gtgatttatggcagtt--tcactctctttctattttacaattgctaatgagaattgaggattgag |
261 |
Q |
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|||||||||| ||||| || ||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
13550459 |
gtgatttatgacagtttctctctctctttctattggaaaattgctaatgagaattgaggattgag |
13550395 |
T |
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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 24868081 - 24867920
Alignment:
| Q |
1 |
tctttttctttgctttcttcttctac--tatgagactattttaaatttcctaaatttagattggatttttcatctaaatgtccttttcaattcaaactgt |
98 |
Q |
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| T |
24868081 |
tctttttctttgttttcttcttctacactatgagactattttaagtttcctaaatttagattggatttttcatctaaatgtccttttcaattcaaactgt |
24867982 |
T |
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| Q |
99 |
tcaattgtagtattcattaatgcacannnnnnnnatcttattttgttaacctcatgaatcttcttttg |
166 |
Q |
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| T |
24867981 |
--aggtgtagtattcgttaatgcac----tttttatcttattttgttaacttcatgaatcttcttttg |
24867920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 32724081 - 32724021
Alignment:
| Q |
28 |
atgagactattttaaatttcctaaatttagattggatttttcatctaaatgtccttttcaa |
88 |
Q |
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| T |
32724081 |
atgagactattttaagtttcctaaatttagattggatttttcatctaaatgtccttttcaa |
32724021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 6077706 - 6077770
Alignment:
| Q |
196 |
agggtgatttatggcagtttcactctctttctattttacaattgctaatgagaattgaggattga |
260 |
Q |
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| T |
6077706 |
agggtgatttatggcagtttctctctctttctatttgacaattgcaaatgagaattgaggattga |
6077770 |
T |
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