View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19445_low_58 (Length: 257)
Name: NF19445_low_58
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 14016761 - 14016992
Alignment:
| Q |
7 |
gagagatgaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaattgatcagaaaggccacaatctcttaaacttagtt |
106 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14016761 |
gagagatcaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggccacaatctcttaaacttagtt |
14016860 |
T |
|
| Q |
107 |
ctctcagttttggtaacttaccaaccatttgcaactaacttttagatttattaagattagatatcgactccatgtgaagatgggttaaagaagtaagatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
14016861 |
ctctcagttttggtaacttaccaaccatttgcaaccaactattagatttattaagattagatatcgacgacatgtgaagatgggttaaagaattaagatt |
14016960 |
T |
|
| Q |
207 |
agacaaccactgacaaccactgtgttcgtcgt |
238 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| |
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|
| T |
14016961 |
agacaaccactgacctccactgggttcgtcgt |
14016992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 13942744 - 13942958
Alignment:
| Q |
6 |
agagagatgaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaattgatcagaaaggccacaatctcttaaacttagt |
105 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |
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| T |
13942744 |
agagagatcaaggatagaaagagaagttgaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggtcacaatatcttaaacttagt |
13942843 |
T |
|
| Q |
106 |
tctctcagttttggtaacttaccaaccatttgcaactaacttttagatttattaagattagatatcgactccatgtgaagatgggttaaagaagtaagat |
205 |
Q |
| |
|
||||| || |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13942844 |
tctcttagatttggtaacttaccaaccattttcaaccaactattagatttattaagattagatatcgaccacatgtgaagatgggttaaagaagtaagat |
13942943 |
T |
|
| Q |
206 |
tagacaaccactgac |
220 |
Q |
| |
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||||||||||||||| |
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|
| T |
13942944 |
tagacaaccactgac |
13942958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 13861365 - 13861141
Alignment:
| Q |
6 |
agagagatgaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaattgatcagaaaggccacaatctcttaaacttagt |
105 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |
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| T |
13861365 |
agagagatcaaggatagaaagagaattggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggtcacaatttcttaaacttagt |
13861266 |
T |
|
| Q |
106 |
tctctcagttttggtaacttaccaaccatttgcaactaacttttagatttattaagattagatatcgactccatgtgaagatgggttaaagaagtaagat |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| |||| ||| |||||| |||||||||||| ||| || ||||||||||||||||||||||||| |
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|
| T |
13861265 |
tctcttagttttggtaacttaccaaccatttttaaccaactattaaatttatcaagattagatattgacatcagatgaagatgggttaaagaagtaagat |
13861166 |
T |
|
| Q |
206 |
tagacaaccactgacaaccactgtg |
230 |
Q |
| |
|
||||||||||||||| |||||||| |
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|
| T |
13861165 |
tagacaaccactgacctccactgtg |
13861141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 14112160 - 14112380
Alignment:
| Q |
10 |
agatgaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaattgatcagaaaggccacaatctcttaaacttagttctc |
109 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |
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|
| T |
14112160 |
agatcaaggattgaaagagaattggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggtcacaatttcttaaacttagttctc |
14112259 |
T |
|
| Q |
110 |
tcagttttggtaacttaccaaccatttgcaactaacttttagatttattaagattagatatcgactccatgtgaagatgggttaaagaagtaagattaga |
209 |
Q |
| |
|
| |||||||||||||||||||||||||| ||| |||| ||| |||||| |||||||||||| ||| || ||||||||||||||||| || |||||||| |
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|
| T |
14112260 |
ttagttttggtaacttaccaaccatttgaaaccaactattaaatttatcaagattagatattgacatcagatgaagatgggttaaagaggttagattaga |
14112359 |
T |
|
| Q |
210 |
caaccactgacaaccactgtg |
230 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
14112360 |
caaccactgacctccactgtg |
14112380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 13471384 - 13471168
Alignment:
| Q |
4 |
cgagagagatgaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaattgatcagaaaggccacaatctcttaaactta |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||| |
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|
| T |
13471384 |
cgagagagatcaaggatagaaagagaagtggaaaatttgaacttggattgactcaaggaatggacaaaatgatcagaaaggccacaatttcttaaactta |
13471285 |
T |
|
| Q |
104 |
gttctctcagttttggtaacttaccaaccatttgcaactaacttttagatttattaagattagatatcgactccatgtgaagatgggttaaagaagtaag |
203 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||| |||| |||| ||| || ||| |||||| ||||||||| ||||||||||||||||||||| |||| |
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|
| T |
13471284 |
gttctatcagttttggtagcttaccaactgtttccaaccaactattaaatctataaagatttgatatcgacgacatgtgaagatgggttaaagaggtaaa |
13471185 |
T |
|
| Q |
204 |
attagacaaccactgac |
220 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
13471184 |
attagacagccactgac |
13471168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 14086347 - 14086571
Alignment:
| Q |
6 |
agagagatgaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaattgatcagaaaggccacaatctcttaaacttagt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| ||||||| |||||| ||||||||||||| |
|
|
| T |
14086347 |
agagagatcgaggatagaaagagaagtggaaaagttgaacttggattgactcagggaatggatgaaatgataagaaaggtcacaatttcttaaacttagt |
14086446 |
T |
|
| Q |
106 |
tctctcagttttggtaacttaccaaccatttgcaactaacttttagatttattaagattagatatcgactccatgtgaagatgggttaaagaagtaagat |
205 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| ||| |||| ||| |||||| |||||||||||| || || | ||||||||||||||||||| |||| |
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|
| T |
14086447 |
tctcttagttttgttaacttaccaaccatttgaaaccaactattaaatttatcaagattagatattcacatcaggcgaagatgggttaaagaagttagat |
14086546 |
T |
|
| Q |
206 |
tagacaaccactgacaaccactgtg |
230 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
14086547 |
tagacaaccactgacctccactgtg |
14086571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 13891389 - 13891180
Alignment:
| Q |
6 |
agagagatgaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaattgatcagaaaggccacaatctcttaaacttagt |
105 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |||||||| |||| |||||| ||||||||||| |||||||||||||||||| | |||| |||| |
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|
| T |
13891389 |
agagagatcaaggatagaaagagatgtggaaaaattgaacttcgatttactcaaagaatggataaaatgatcagaaaggccacaacttattaactctagt |
13891290 |
T |
|
| Q |
106 |
tctctcagttttggtaacttaccaaccatttgcaactaacttttagatttattaagattagatatcgactccatgtgaagatgggttaaagaagtaagat |
205 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| |||| || ||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
13891289 |
tctctcagttttagtagcttaccaaccatttgcaaccaactattggatttatcaagactagatattgacaacatgtgaagatgggttaaagaagtaagat |
13891190 |
T |
|
| Q |
206 |
tagacaacca |
215 |
Q |
| |
|
|||| ||||| |
|
|
| T |
13891189 |
tagataacca |
13891180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 14026725 - 14026851
Alignment:
| Q |
10 |
agatgaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaattgatcagaaaggccacaatctcttaaacttagttctc |
109 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
14026725 |
agatcaaggatagaaagggaagtggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggccacaattttgtaaacttagttctc |
14026824 |
T |
|
| Q |
110 |
tcagttttggtaacttaccaaccattt |
136 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14026825 |
tcagttttggtaacttaccaaccattt |
14026851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 14048920 - 14049067
Alignment:
| Q |
73 |
tgatcagaaaggccacaatctcttaaacttagttctctcagttttggtaacttaccaaccatttgcaactaacttttagatttattaagattagatatcg |
172 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||| || |||||||| |||||||||||||| |||| |||| ||| || ||| |||||| |||| | |
|
|
| T |
14048920 |
tgatcagaaaggtcacaatctgttaaatttagttctcccaattttggtagcttaccaaccatttccaacaaactattaaatctatcaagattcaatattg |
14049019 |
T |
|
| Q |
173 |
actccatgtgaagatgggttaaagaagtaagattagacaaccactgac |
220 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14049020 |
acgacatgtgaagatgggttaaagaagtaagattagacaaccactgac |
14049067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 13873675 - 13873449
Alignment:
| Q |
4 |
cgagagagatgaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatggataaattgatcagaaaggccacaatctcttaaactta |
103 |
Q |
| |
|
|||||||| | ||||||||| |||||| |||||||||| | || | ||||| ||||| | ||| ||||||||||| |||||| | |||||||| |
|
|
| T |
13873675 |
cgagagaggtcaaggatagagagagaactggaaaagttaagatttaaaggactcgatgaaagagtaatatgatcagaaagaccacaactttctaaactta |
13873576 |
T |
|
| Q |
104 |
gttctctcagttttggtaacttaccaaccatttgcaactaacttttagatttattaagattagatatcgactccatgtgaagatgggttaaagaagtaag |
203 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||||| |||| ||| || ||| |||||||||||| ||| ||| |||||||||||||||||||| || |
|
|
| T |
13873575 |
gttctttcagttttggtagcttaccaaccaattgcaaccaactattaaatctatcaagattagatattgacaacatctgaagatgggttaaagaagttag |
13873476 |
T |
|
| Q |
204 |
attagacaaccactgacaaccactgtg |
230 |
Q |
| |
|
||| ||||||||| || |||||||| |
|
|
| T |
13873475 |
attcaacaaccacttacctccactgtg |
13873449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 14026857 - 14026893
Alignment:
| Q |
184 |
agatgggttaaagaagtaagattagacaaccactgac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14026857 |
agatgggttaaagaagtaagattagacaaccactgac |
14026893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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