View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_60 (Length: 255)
Name: NF19445_low_60
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 239
Target Start/End: Original strand, 5763312 - 5763525
Alignment:
| Q |
26 |
tgatgaacatgaaagagataacaaagccaaccagaaagtttcattccacaaactcttcacttttgctgatagtcttgatgtaacattgatgatcattggc |
125 |
Q |
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| T |
5763312 |
tgatgaacatgaaagagataacaaagccaaccagaaagtttcattccacaaactctttacttttgctgatagtcttgatgtaacattgatgatcattggc |
5763411 |
T |
|
| Q |
126 |
accatctctgccgttgctaatggtatgatacagcctatcatgactctcattcttggcaaaatcatcaatacctttggctcaacagatcctcaccacatag |
225 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5763412 |
accatctctgccgttgctaatggtatgacacagcctatcatgactctcattcttggcaaaatcatcaatacctttggctcaatagatcctcaccacatag |
5763511 |
T |
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| Q |
226 |
tcaaagaagtttct |
239 |
Q |
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|||||||||||||| |
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| T |
5763512 |
tcaaagaagtttct |
5763525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 5835375 - 5835266
Alignment:
| Q |
39 |
agagataacaaagccaaccagaaagtttcattccacaaactcttcacttttgctgatagtcttgatgtaacattgatgatcattggcaccatctctgccg |
138 |
Q |
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|||||||||||| | || || |||||| ||||| ||| || |||| |||||||||| |||||||||||| ||||||||||||||||| |||||||| | |
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| T |
5835375 |
agagataacaaaacaaaacaaaaagttccattctacatgcttttcaattttgctgatcatcttgatgtaacgttgatgatcattggcactatctctgctg |
5835276 |
T |
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| Q |
139 |
ttgctaatgg |
148 |
Q |
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| |||||||| |
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| T |
5835275 |
tggctaatgg |
5835266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 29332842 - 29332738
Alignment:
| Q |
44 |
taacaaagccaaccagaaagtttcattccacaaactcttcacttttgctgatagtcttgatgtaacattgatgatcattggcaccatctctgccgttgct |
143 |
Q |
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||||||||||||||| | |||| ||||| |||| ||||| | |||||||||| ||||||| ||||| ||||||||||||||||| || |||||| | ||| |
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| T |
29332842 |
taacaaagccaaccaaatagttccattctacaagctctttagttttgctgatcgtcttgacgtaactttgatgatcattggcactatttctgccatggct |
29332743 |
T |
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| Q |
144 |
aatgg |
148 |
Q |
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||||| |
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| T |
29332742 |
aatgg |
29332738 |
T |
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