View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_62 (Length: 251)
Name: NF19445_low_62
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_62 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 31320023 - 31320261
Alignment:
| Q |
13 |
aatatgaaaatggaggtatgttagcttctgttgattcaagaatagttatttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatg |
112 |
Q |
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| T |
31320023 |
aatatgaaaaaggaggtatgttagcttctgttgattcaagaatagttctttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatg |
31320122 |
T |
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| Q |
113 |
cataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcccctctttgaaagcttagagtatctatctgctatggaaaccgtgtgt |
212 |
Q |
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| T |
31320123 |
cataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcccctctttgaaaccttagagtatctatctgctatggaaaccgtgtgt |
31320222 |
T |
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| Q |
213 |
gagaggattggtgtcaaagaaaattgtacacaagaagga |
251 |
Q |
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| T |
31320223 |
gagaggattggtgtcaatgaaaattgtacacaagaagga |
31320261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 31332276 - 31332514
Alignment:
| Q |
13 |
aatatgaaaatggaggtatgttagcttctgttgattcaagaatagttatttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatg |
112 |
Q |
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|||||||||||||||| || |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
31332276 |
aatatgaaaatggagggatcctagcttctattgattcaagaatacttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttg |
31332375 |
T |
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| Q |
113 |
cataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcccctctttgaaagcttagagtatctatctgctatggaaaccgtgtgt |
212 |
Q |
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| T |
31332376 |
cattaaaacaccagaaaaggtgttgaaagaatggtcagagaaacacaaactttcactctttgatagcatagagtatctatctgctatggaaactgtgtgc |
31332475 |
T |
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| Q |
213 |
gagaggattggtgtcaaagaaaattgtacacaagaagga |
251 |
Q |
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| T |
31332476 |
gagagaattggtgtcaacgaaaattgtacacaagaagga |
31332514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 3647 - 3409
Alignment:
| Q |
13 |
aatatgaaaatggaggtatgttagcttctgttgattcaagaatagttatttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatg |
112 |
Q |
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| T |
3647 |
aatatgaaaatggagggatcctagcttctattgattcaagaatacttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttg |
3548 |
T |
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| Q |
113 |
cataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcccctctttgaaagcttagagtatctatctgctatggaaaccgtgtgt |
212 |
Q |
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| T |
3547 |
cattaaaacaccagaaaaggtgttgaaagaatggtcagagaaacacaaactttcactctttgatagcatagagtatctatctgctatggaaactgtgtgc |
3448 |
T |
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| Q |
213 |
gagaggattggtgtcaaagaaaattgtacacaagaagga |
251 |
Q |
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| T |
3447 |
gagagaattggtgtcaacgaaaattgtacacaagaagga |
3409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 33522350 - 33522292
Alignment:
| Q |
53 |
aatagttatttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcat |
111 |
Q |
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| T |
33522350 |
aatagttcttctagcaggttcaacaattggtggtggttctgctgttaattggtcagcat |
33522292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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