View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_63 (Length: 250)
Name: NF19445_low_63
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 1628651 - 1628876
Alignment:
| Q |
15 |
cataggtcatgtggttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgat--------aactgtcataaaca |
106 |
Q |
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| T |
1628651 |
cataggtcatgtggttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgataacttgataactgtcataaaca |
1628750 |
T |
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| Q |
107 |
acataattcaaaggacggaagagaaatacataagctgcggtgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggac |
206 |
Q |
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| T |
1628751 |
acataattcaaaggacggaagcgaaatacataagttgcggtgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggac |
1628850 |
T |
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| Q |
207 |
atactactgtggcgttagcaactact |
232 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1628851 |
atactactgtggcgttagcaactact |
1628876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 10821868 - 10821806
Alignment:
| Q |
147 |
tgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggacata |
209 |
Q |
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| T |
10821868 |
tgttgatcctcaaacttgtttccaaaccttcaaaaacatgcacgagtctcgcgcatggacata |
10821806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 37545266 - 37545197
Alignment:
| Q |
25 |
gtggttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgataa |
94 |
Q |
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| T |
37545266 |
gtggtttcaaccattacataaaggttcatcattcaatcataatctattaaagtttagatacacatgataa |
37545197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 29413317 - 29413160
Alignment:
| Q |
29 |
ttccaaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatg------ataactgtcataaacaacataattcaaaggac |
122 |
Q |
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|||||||||||||| || |||| ||||||||||| ||| ||||||||||||||||||| || || | ||| ||||||||||||||| |||| |
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| T |
29413317 |
ttccaaccattacataattgtttatcattcaatcataaaatatgaaagtttagttacacttgattccaatcagtgtaataaacaacataatttaaagagt |
29413218 |
T |
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| Q |
123 |
ggaagagaaatacataagctgcggtgttgatcctcaaacttgtttccaaaccttcaaa |
180 |
Q |
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| T |
29413217 |
ggaagagaaatacataaacacatgtgtagatctttaaacttgttttcaagccttcaaa |
29413160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 7674195 - 7674242
Alignment:
| Q |
48 |
gttcatcattcaatcctaatttatgaaagtttagttacacatgataac |
95 |
Q |
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| T |
7674195 |
gttcatcattcaatcctaatctacgagagtttagttacacatgataac |
7674242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 8320071 - 8320002
Alignment:
| Q |
49 |
ttcatcattcaatcctaatttatgaaagtttagttacacatgataactgtcataaacaacataattcaaa |
118 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||| ||||| || |||||||||| | |||||| |
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|
| T |
8320071 |
ttcatcattcaatcataatttatgagagtttagttacacgtgatactagtaataaacaacaaagttcaaa |
8320002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 36296210 - 36296257
Alignment:
| Q |
48 |
gttcatcattcaatcctaatttatgaaagtttagttacacatgataac |
95 |
Q |
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|||||| ||||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
36296210 |
gttcatgattcaatcctaatctatgagagtttagttacacataataac |
36296257 |
T |
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