View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_65 (Length: 247)
Name: NF19445_low_65
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_65 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13715893 - 13716124
Alignment:
| Q |
1 |
tctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccggg |
100 |
Q |
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| T |
13715893 |
tctgccattgttggtgcacgatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagacttcaccaatggctcaccggg |
13715992 |
T |
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| Q |
101 |
ccacatgtccttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaagccaaatg |
200 |
Q |
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| T |
13715993 |
ccacatgtgcttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaagccaaatg |
13716092 |
T |
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| Q |
201 |
gaagaagcaatatgatgtttgatcggagaact |
232 |
Q |
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| T |
13716093 |
gaagaagcaatatgatgcttgatcggagaact |
13716124 |
T |
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Target: scaffold0118 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 36164 - 36391
Alignment:
| Q |
4 |
gccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccgggcca |
103 |
Q |
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| T |
36164 |
gccattgatggtgcagaatgtaatctgacaccttcatgtccagctgagcatgaaaatgtgaaggaatgctgagagactgcaccaacggctcacccaacca |
36263 |
T |
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| Q |
104 |
catgtccttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaagccaaatggaa |
203 |
Q |
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| T |
36264 |
cctgtccttccaaaagagaacattctccccattcccaatattccaagtagaattaactaacaccaactgcacaaaagacttaagccgaggccaaatcgaa |
36363 |
T |
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| Q |
204 |
gaagcaatatgatgtttgatcggagaac |
231 |
Q |
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| T |
36364 |
taagtagtatgatgttggatcggagaac |
36391 |
T |
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