View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_66 (Length: 240)
Name: NF19445_low_66
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 52218826 - 52218983
Alignment:
| Q |
1 |
tggaacaacaaacatgtgtggacaaataaacaaaagaaagaaacgtgcaaacacggttttaaaattctgttttttctaataatgaagtatgtgtatggtg |
100 |
Q |
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| T |
52218826 |
tggaacaacaaacatgtgtggacaaataaacaaaagaaagaaacgtgcaaacacggttttaaaattctgttttttctaataatgaagtatgtgtatggtg |
52218925 |
T |
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| Q |
101 |
aacattatagtatatgatgtggcaaaatgataaacataattttacatagaataagaac |
158 |
Q |
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| T |
52218926 |
aacattatagtatatgatgtggcaaaatgataaacataattttgcatagaataagaac |
52218983 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 52219025 - 52219060
Alignment:
| Q |
189 |
caagctaaccttgcacattggtgcagccaaaatagc |
224 |
Q |
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| T |
52219025 |
caagctaaccttgcacattggtgcagccaaaatagc |
52219060 |
T |
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