View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19445_low_68 (Length: 228)

Name: NF19445_low_68
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19445_low_68
NF19445_low_68
[»] chr7 (4 HSPs)
chr7 (19-82)||(47808346-47808409)
chr7 (148-210)||(47808218-47808280)
chr7 (21-82)||(47805861-47805922)
chr7 (148-204)||(47805652-47805708)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 47808409 - 47808346
Alignment:
Q  19 gttcaagctcttccctttcatctagtaatgcaatttttgtactgcacaaatggtcaaggaggca 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47808409 gttcaagctcttccctttcatctagtaatgcaatttttgtactgcacaaatggtcaaggaggca 47808346  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 47808280 - 47808218
Alignment:
Q  148 gatactattaattcatataatgatttctatatgacacaagaaggatattctttatttcgtcct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47808280 gatactattaattcatataatgatttctatatgacacaagaaggatattctttatttcgtcct 47808218  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 47805922 - 47805861
Alignment:
Q  21 tcaagctcttccctttcatctagtaatgcaatttttgtactgcacaaatggtcaaggaggca 82  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||||||  ||||||||||||    
T  47805922 tcaagctcttccctttcatttagtaatgcaatttttgtacaacacaaacagtcaaggaggca 47805861  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 47805708 - 47805652
Alignment:
Q  148 gatactattaattcatataatgatttctatatgacacaagaaggatattctttattt 204  Q
    |||||||  ||||||| | || |||||||||||| ||||||||||||||||||||||    
T  47805708 gatactaagaattcattttatcatttctatatgatacaagaaggatattctttattt 47805652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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