View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_7 (Length: 597)
Name: NF19445_low_7
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 44 - 582
Target Start/End: Complemental strand, 6274807 - 6274272
Alignment:
| Q |
44 |
taagattgcactacatattaaataggatacttaaactaaatataaatatcaaatttgtactcatcataagtgataataacactcaaaatactgctcaaat |
143 |
Q |
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|||||| ||||| ||||| | |||||| |||| |||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||| |
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| T |
6274807 |
taagatagcactccatatcatataggagacttgaactaattataaatatcaaatttgtactcat---aagtgacaataaaactcaaaatacagctcaaat |
6274711 |
T |
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| Q |
144 |
aaactaaaacgagtgaactttgctttatttctgggattagtctaaagactaacctatttatctctcttaatccaacagctctgcagcatgtggcatcact |
243 |
Q |
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| T |
6274710 |
aaactaaaatgagtgaaattttctttatttctgggattagtctaaagaccaacctatttatctctcttaatccaacggctctcgagcatgcggcatcact |
6274611 |
T |
|
| Q |
244 |
cttgaaatcggtctatttcgaagcagcactaatcgctgcatatcgagatttgaaaaagccgaggagtccatcttttggagggagattctctttcacaata |
343 |
Q |
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| T |
6274610 |
cctgaaatcagtctatttcgaagcagcactaatcgctgcatatcgagatttgaaaaagccgaggagtccatcttttggagggagattctctttcacaata |
6274511 |
T |
|
| Q |
344 |
ggatgattgttgaattcttgactccacttatagagcttaggaaatttgtcactgctaagaacctttaaccctacagcttcttcaatcacaggaagccaga |
443 |
Q |
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| T |
6274510 |
ggatgattgttgaattcttgactccacttatagagcttaggaaatttgtcactgctaagaacctttaaccctacagcttcttcaatcgcaggaagccaga |
6274411 |
T |
|
| Q |
444 |
aagctaagtaggaagcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaattgtagggcttgcaatga |
543 |
Q |
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| T |
6274410 |
aagctaagtaggaagcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaattgtagggcttgcaatga |
6274311 |
T |
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| Q |
544 |
ttcttcaatgcctttctcacgttcttctttgttcactgt |
582 |
Q |
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| T |
6274310 |
ttcttcaatgcctttctcacgttcttctttgttcactgt |
6274272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 495
Target Start/End: Complemental strand, 6275343 - 6275266
Alignment:
| Q |
419 |
gcttcttcaatcacaggaagccagaaagctaag-taggaagcagcaatgtccacaatgctaatgttttctccaccaaa |
495 |
Q |
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| T |
6275343 |
gcttcttcaatcacagggagtcagaaagcttaggtaggaagcagcaatgtccacaatactaattttctctccaccaaa |
6275266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 528
Target Start/End: Original strand, 23790170 - 23790240
Alignment:
| Q |
458 |
gcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaattg |
528 |
Q |
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| T |
23790170 |
gcagtaatgtcaacaatgccaatctcatctccaccaaagaatttgtccttgagctcattctctagaaattg |
23790240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 525
Target Start/End: Complemental strand, 23853371 - 23853299
Alignment:
| Q |
453 |
aggaagcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaa |
525 |
Q |
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| T |
23853371 |
aggaagcagcaatatccacaaagctaatctcctctcctccaaagaacttgtccttcagctcattctcaagaaa |
23853299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 23821140 - 23821183
Alignment:
| Q |
485 |
tctccaccaaagaatttgtgcttgagttcattctcaagaaattg |
528 |
Q |
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| T |
23821140 |
tctccaccaaagaacttgtccttgagctcattctcaagaaattg |
23821183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 525
Target Start/End: Original strand, 23801060 - 23801097
Alignment:
| Q |
488 |
ccaccaaagaatttgtgcttgagttcattctcaagaaa |
525 |
Q |
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| T |
23801060 |
ccaccaaagaatttgtccttgagctcattctcaagaaa |
23801097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 23805819 - 23805860
Alignment:
| Q |
485 |
tctccaccaaagaatttgtgcttgagttcattctcaagaaat |
526 |
Q |
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| T |
23805819 |
tctccaccaaagaatttgtctttgagctcattctcaagaaat |
23805860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 528
Target Start/End: Original strand, 23815693 - 23815733
Alignment:
| Q |
488 |
ccaccaaagaatttgtgcttgagttcattctcaagaaattg |
528 |
Q |
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| T |
23815693 |
ccaccaaagaatttgtctttgagctcattctcaagaaattg |
23815733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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