View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_71 (Length: 223)
Name: NF19445_low_71
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 9444279 - 9444401
Alignment:
| Q |
9 |
aggaagaagagaaagtaagagaataccttagcttcaagatcaatatccatcgttttggtcatgaggctccctatataatcacataatgcgtgtctttaaa |
108 |
Q |
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| T |
9444279 |
aggaaaaagagaaagtgagagaataccttagcttcaagatcaatatccatcgttttggtcatgcggctccctatacaatcacataatgcgtgtctttaaa |
9444378 |
T |
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| Q |
109 |
ttgtgcatatatataaacacaca |
131 |
Q |
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| T |
9444379 |
ttgtgcatatatataaacacaca |
9444401 |
T |
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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 9444454 - 9444484
Alignment:
| Q |
178 |
cttacttgttgaaggaacagcagcaacatat |
208 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
9444454 |
cttacttgttgaaggaacagcagcaacatat |
9444484 |
T |
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