View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_8 (Length: 572)
Name: NF19445_low_8
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 32 - 557
Target Start/End: Original strand, 55506458 - 55506972
Alignment:
| Q |
32 |
cgaacaacaattcctaaatttagactttgttgatgttgtttgctttgtactcttgttcccttgccatggtttatccccctggattttcctgacaaggtct |
131 |
Q |
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| T |
55506458 |
cgaacaacaattcctaaatttagactttgttgatgttgtttgctttgtactcttgttcccttgccatggtttatccccctggattttcctgacaaggtct |
55506557 |
T |
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| Q |
132 |
tattgatgcaaatgttgagttcgcttcgttcgttttggtctatcgccgtctttctatcattcgctttattttcataatatctctagaatggcggctaagg |
231 |
Q |
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| T |
55506558 |
tattgatgcaaatgttgagttcgcttcgttcgcacaagt--------gtctttctatctttctctttattttcataatatctctagaatggcggctaagg |
55506649 |
T |
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| Q |
232 |
ggtactaaacgtagttgtaatgtcttgattttgtctttgcacactctgccgttgaaagaaggttagatttttaatttcttttcctagacctagttcatgt |
331 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||| |
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| T |
55506650 |
ggtact-aacgtagttgtaatgtcttgattttgtctttgcacactctgctgttgaaagaaggttagatttttaattt------cgactcctagttcatgt |
55506742 |
T |
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| Q |
332 |
taaaagtcatcttaaatgtacattcaaaatcaaagacgcaaacattttgcacccaattcttatatttagaaaaagcaaaaattaaaacaacatgtctcgt |
431 |
Q |
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| T |
55506743 |
taaaagtcatcttaaatgtacattcaaaatcaaagacacaaacattttgcacccaattcttatatttagaaaaaacaaaaattaaaacaacatgtctcgt |
55506842 |
T |
|
| Q |
432 |
gtttac---ctactctatgtatacgaccaacgc-nnnnnnnnnnnnnnnngcatgtttgttggttagtaaagtaaaaaccattattgcttcatgtgcttg |
527 |
Q |
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| T |
55506843 |
gtttacctactactctatgtatccgaccaacgctttttgttttattttttgcatgtttgttggttagtaaagtaaaaaccattattgcttcatgtgcttg |
55506942 |
T |
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| Q |
528 |
aaggcaatacaaagaaacgaggatcatgtt |
557 |
Q |
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| T |
55506943 |
aaggcaatacaaagaaacgaggatcatgtt |
55506972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 376 - 458
Target Start/End: Original strand, 43996919 - 43997001
Alignment:
| Q |
376 |
ttttgcacccaattcttatatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttacctactctatgtatacgaccaa |
458 |
Q |
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| T |
43996919 |
tttttcacccaattcttatatttataaaaggcaaaaattaaaagaacatgtctcgtgtgtacctactctatgtatccgaccaa |
43997001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 393 - 557
Target Start/End: Complemental strand, 43633245 - 43633075
Alignment:
| Q |
393 |
atatttagaaaaagcaaaaattaaaacaacatgtctcgtgtttacctactctatgtatacgaccaacgcnnnnnnnnnnnnnnnn-gcatgtttgttggt |
491 |
Q |
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| T |
43633245 |
atatttataaaaggtaaaaattaaaagaacatgtctcgtgtgtacctactctatgtatccgaccaacgcttttgttttatttttttgcatgtttattggt |
43633146 |
T |
|
| Q |
492 |
tagtaaa--gtaaaaaccattattgcttcatgtg---cttgaaggcaatacaaagaaacgaggatcatgtt |
557 |
Q |
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| T |
43633145 |
tagtaaaaagtaaaaaccattattgcttcatgtgttacttgaaggcaatgcaaagaaacgacgatcatgtt |
43633075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 478 - 540
Target Start/End: Original strand, 43997023 - 43997088
Alignment:
| Q |
478 |
gcatgtttgttggttagtaaagtaaaaaccattattgcttcatgtg---cttgaaggcaatacaaa |
540 |
Q |
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| T |
43997023 |
gcatgtttattggttagtaaagtaaaaaccattattgcttcatgtgttacttgaaggcaatgcaaa |
43997088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 43996514 - 43996561
Alignment:
| Q |
114 |
attttcctgacaaggtcttattgatgcaaatgttgagttcgcttcgtt |
161 |
Q |
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| T |
43996514 |
attttcctcacaaggtcttattgatgtgaatgttgagttctcttcgtt |
43996561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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