View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19445_low_9 (Length: 553)
Name: NF19445_low_9
Description: NF19445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19445_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 8 - 553
Target Start/End: Original strand, 3520707 - 3521252
Alignment:
| Q |
8 |
tcgaagaatatccaaaacactaggatcaccgcataaatgtatctcgtcagccatcaaaccaaggagcgccctagtccatgcataacctctatacggatct |
107 |
Q |
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| T |
3520707 |
tcgaacaatatccaaaacactaggatcaccgcataaatgtatctcgtcagccatcaaaccaaggagcgccctagtccatgcataacctctatacggatct |
3520806 |
T |
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| Q |
108 |
gccatcatctgaatttcatcaacaatagccacttcatacaattcctgcgtcgaagccatttcaacagtacatgcaacatgatttgaaaatggtaaatact |
207 |
Q |
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| T |
3520807 |
gccatcatctgaatttcatcaacaatagccacttcatacaattcctgcgtcgaagccatttcaacagtacacgcaacatgatttgaaaatggtaaatact |
3520906 |
T |
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| Q |
208 |
tcttctcttgaccagttaacagactacaataaacacccttcgcattaactttatcaaaaacttccatagccaacaatctaagtggactacaataaatgcc |
307 |
Q |
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| T |
3520907 |
tcttctcttgaccagttaacagactacaataaacacccttcgcattaactttatcaaaaacttccatagccaacaatctaagtggactacaataaatacc |
3521006 |
T |
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| Q |
308 |
cttcttcgcctccataaacctctgcaaagcattataagtcttaccactattagtaggcccgcaatgataaattatttttcttttcatcgcccttgcaaaa |
407 |
Q |
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| T |
3521007 |
cttcttcgcctccataaacctctgcaaagcattataagtcttaccactattagtaggcccgcaatgataaattatttttcttttcatcgcccttgcaaaa |
3521106 |
T |
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| Q |
408 |
ggaaaccaagtatgaggcatcgtgaggtcagccgacttaaccatctccctaaacatcgtgatctcatcagtaaaattttccaaacaaaactcaacaaata |
507 |
Q |
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| T |
3521107 |
ggaaaccaagtatgaggcatcgtgaggtcagccgacttaaccatctccctaaacctcgtgatctcatcagtaaaattttccaaacaaaactcaacaaata |
3521206 |
T |
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| Q |
508 |
taggaaacaaaaacttcacagcctcatcacatggtccaagcgaaat |
553 |
Q |
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| T |
3521207 |
taggaaacaaaaacttcacagcctcatcacacggtccaagcgaaat |
3521252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 3713529 - 3713217
Alignment:
| Q |
14 |
aatatccaaaacactaggatcaccgcataaatgtatctcgtcagccatcaaaccaaggagcgccctagtccatgcataacctctatacggatctgccatc |
113 |
Q |
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| T |
3713529 |
aatatgcaaaacactaggatcaccgcataaatgtagctcatcatcctttaaaccaatgagtactctagtacaggcatacccactatatgaatctgccatc |
3713430 |
T |
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| Q |
114 |
atctgaatttcatcaacaatagccacttcatacaattcctgcgtcgaagccatttcaacagtacatgcaacatgattt--gaaaatggtaaatacttctt |
211 |
Q |
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| T |
3713429 |
atctgaatctcgtcaacaatagtcatatcatacgattcctactttgaagccattcccaccgtgcatgcgacatattatacgaaaacaggacatgcttctt |
3713330 |
T |
|
| Q |
212 |
ctcttgaccagttaacagactacaataaacacccttcgcattaactttatcaaaaacttccatagccaacaatctaagtggactacaataaatgcccttc |
311 |
Q |
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| T |
3713329 |
cttttgaccagttaacggacttcaataaacacctttggcattaacctcatcaaaaactttcatagtcaacaatctgagtggactacaacaattccttttc |
3713230 |
T |
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| Q |
312 |
ttcgcctccataa |
324 |
Q |
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| T |
3713229 |
ttcgcctccataa |
3713217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 3719852 - 3719758
Alignment:
| Q |
262 |
caaaaacttccatagccaacaatctaagtggactacaataaatgcccttcttcgcctccataaacctctgcaaagcattataagtcttaccactatt |
358 |
Q |
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| T |
3719852 |
caaaaacttccataaccaacaatcagaggggacta--acaattccctttctttgcctccataaatctctgcaaagcagtataagttttaccactatt |
3719758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 3719989 - 3719946
Alignment:
| Q |
14 |
aatatccaaaacactaggatcaccgcataaatgtatctcgtcag |
57 |
Q |
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| T |
3719989 |
aatatgcaaaacattaggatcaccgcataaatgtagctcgtcag |
3719946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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