View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19446_high_16 (Length: 217)

Name: NF19446_high_16
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19446_high_16
NF19446_high_16
[»] chr5 (11 HSPs)
chr5 (22-200)||(8529494-8529672)
chr5 (24-199)||(8536060-8536235)
chr5 (24-192)||(1599679-1599847)
chr5 (22-191)||(9074118-9074287)
chr5 (66-184)||(8547470-8547588)
chr5 (74-187)||(2844435-2844548)
chr5 (74-187)||(2873878-2873991)
chr5 (74-187)||(2856268-2856381)
chr5 (68-191)||(8644833-8644956)
chr5 (74-187)||(2904384-2904497)
chr5 (77-121)||(9004088-9004132)
[»] chr4 (1 HSPs)
chr4 (22-200)||(9443655-9443833)
[»] chr7 (3 HSPs)
chr7 (24-200)||(48361223-48361399)
chr7 (66-180)||(35780429-35780544)
chr7 (24-56)||(35780372-35780404)
[»] chr6 (1 HSPs)
chr6 (65-191)||(16716982-16717108)
[»] scaffold0627 (1 HSPs)
scaffold0627 (74-179)||(5293-5398)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 8529494 - 8529672
Alignment:
Q  22 atccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8529494 atccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactat 8529593  T
Q  122 tgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaatatctctg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529594 tgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaatatctctg 8529672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 8536060 - 8536235
Alignment:
Q  24 ccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatg 123  Q
    |||||||||||||| ||| || ||||||| ||| || |||  | | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  8536060 ccaaaaccagcttgtcctagccttcttacccgattttgatccgcaatagattcaggaagtcttataaactccccagtgactgggttgcagatcactaatg 8536159  T
Q  124 ggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaatatctct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8536160 ggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctct 8536235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 1599847 - 1599679
Alignment:
Q  24 ccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatg 123  Q
    |||||| ||||| | |||||| ||| ||| |||||| |||| |  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  1599847 ccaaaagcagctcgtccttgccttcctacccgagtttgattcgcggtagattcaggaagtcttatgaactccccagtgattgggttgcagatcactaatg 1599748  T
Q  124 ggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaa 192  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1599747 ggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaagaattcacaatattaaacttatcaa 1599679  T

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Target: chr5; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 9074287 - 9074118
Alignment:
Q  22 atccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaa 121  Q
    ||||||||||| |||| |||  ||||||||| ||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||| |    
T  9074287 atccaaaaccaacttgtcctaccattcttacccgagttcgattcgtggtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactga 9074188  T
Q  122 tgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatca 191  Q
     ||||||||   || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074187 agggtttccggtagttggttcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatca 9074118  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 8547588 - 8547470
Alignment:
Q  66 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 165  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||    
T  8547588 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 8547489  T
Q  166 aagaattcacaatatcaaa 184  Q
    |||||||||||||||||||    
T  8547488 aagaattcacaatatcaaa 8547470  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 2844548 - 2844435
Alignment:
Q  74 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 173  Q
    |||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | |||||  ||||| |||||||| || |||||||||||||||    
T  2844548 ttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc 2844449  T
Q  174 acaatatcaaactt 187  Q
    |||||  |||||||    
T  2844448 acaatgccaaactt 2844435  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 2873991 - 2873878
Alignment:
Q  74 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 173  Q
    |||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | |||||  ||||| |||||||| || |||||||||||||||    
T  2873991 ttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc 2873892  T
Q  174 acaatatcaaactt 187  Q
    |||||  |||||||    
T  2873891 acaatgccaaactt 2873878  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 2856381 - 2856268
Alignment:
Q  74 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 173  Q
    |||||||||| || | || |||| ||| ||||||||||| |||||||| ||| |||| | |||||  ||||| |||||||| || |||||||||||||||    
T  2856381 ttcaggaagtattgtaaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc 2856282  T
Q  174 acaatatcaaactt 187  Q
    |||||  |||||||    
T  2856281 acaatgccaaactt 2856268  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 8644833 - 8644956
Alignment:
Q  68 agtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaa 167  Q
    ||||| || |||||||||||| |||||||| |||||||| ||||| || ||||||||  ||||   | |||| | |  ||||||||| || |||||||||    
T  8644833 agtagctttaggaagtcttataaactccccagtgactggattgcaaattactaatggtcttccttcaaatggatgacgcaaacaaagcaagccattgcaa 8644932  T
Q  168 gaattcacaatatcaaacttatca 191  Q
    |||||||||| | |||||||||||    
T  8644933 gaattcacaacaccaaacttatca 8644956  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 2904497 - 2904384
Alignment:
Q  74 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 173  Q
    |||||||||| || |||| |||| ||| ||||||||||| ||| |||| ||| ||||   |||||  ||||| |||||||| || |||||||||||||||    
T  2904497 ttcaggaagtattgtgaattccctcgttactgggttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattc 2904398  T
Q  174 acaatatcaaactt 187  Q
    |||||  |||||||    
T  2904397 acaatgccaaactt 2904384  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 9004088 - 9004132
Alignment:
Q  77 aggaagtcttatgaactcccccgtgactgggttgcagatcactaa 121  Q
    ||||||||||||||| ||||| |||||||||||||| | ||||||    
T  9004088 aggaagtcttatgaattccccagtgactgggttgcataccactaa 9004132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 9443655 - 9443833
Alignment:
Q  22 atccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9443655 atccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactat 9443754  T
Q  122 tgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaatatctctg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443755 tgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaatatctctg 9443833  T

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Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 48361399 - 48361223
Alignment:
Q  24 ccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatg 123  Q
    |||||||||||||| |||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  48361399 ccaaaaccagcttgtccttgcattcttacccgagttcgatacgcagtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacg 48361300  T
Q  124 ggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaatatctctg 200  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48361299 ggtttcccaaagatggatcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctctg 48361223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 35780429 - 35780544
Alignment:
Q  66 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatggg-tttccaaaagatgggtcagacaaacaaagtaaaccattg 164  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |   | |||| | |||||||||||| |||||||||    
T  35780429 gtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaaagcaaaccattg 35780528  T
Q  165 caagaattcacaatat 180  Q
    |||||||| |||||||    
T  35780529 caagaattgacaatat 35780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 35780372 - 35780404
Alignment:
Q  24 ccaaaaccagcttgaccttgcattcttactcga 56  Q
    |||||||||||||| ||||||||||||||||||    
T  35780372 ccaaaaccagcttgtccttgcattcttactcga 35780404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 16716982 - 16717108
Alignment:
Q  65 tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg 164  Q
    |||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||  |||||||||  || ||| ||||||||||| || || |||||     
T  16716982 tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta 16717081  T
Q  165 caagaattcacaatatcaaacttatca 191  Q
    || ||||||||||||| ||||||||||    
T  16717082 catgaattcacaatattaaacttatca 16717108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 5293 - 5398
Alignment:
Q  74 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 173  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||   || ||| | ||||||||| || || ||||| || ||||||    
T  5293 ttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccattacaggaattc 5392  T
Q  174 acaata 179  Q
    ||||||    
T  5393 acaata 5398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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