View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19446_high_2 (Length: 476)
Name: NF19446_high_2
Description: NF19446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19446_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Original strand, 1161339 - 1161805
Alignment:
| Q |
9 |
acatcatcacacactctcccatgtgcacacttatacaaataaccatcaaatgtcatccttagcacatgctcatcaccacaaagctcccaacccaaagctt |
108 |
Q |
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| T |
1161339 |
acatcatcacacactctcccgtgtgcacacttatacaaataaccatcaaatgtcatccttagcacatgctcatcaccacaaagctcccaacccaaagctt |
1161438 |
T |
|
| Q |
109 |
ccctaggcgcgttactacgatnnnnnnnnccttcacagcaaatccaagaacataaagtagaaaatgcattgaaaccctttgcaacaaatacaaaaaccta |
208 |
Q |
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| T |
1161439 |
ccctaggcgtgttactaggataaaaaaaacctctgcaacaaatccaagaacataaagtagaaaatgcattgaaaccctttgcaacaaatccaaaaaccta |
1161538 |
T |
|
| Q |
209 |
aaagtagaaaatgcattgagatggagaactaaatcatacaaaaaattcaaacatttacctagtctagccatgaccatattcaactgcatacatcaataac |
308 |
Q |
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| T |
1161539 |
aaagtagaaaatgcactgagatggagaactaaatcatacaaaaaattcaaacatttacctagtctagctatgaccatattcaactgcatacatcaataac |
1161638 |
T |
|
| Q |
309 |
ttccacagcacactaccattttaaaatcctaaaaattgaagcttctagctcctaaattttgatacacaaataatctctatattgggtactacttctagtt |
408 |
Q |
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| T |
1161639 |
ttccacagcacactaccattttaaaatcctaaatattgaagcttctacctcctaaattttgctacacaaataatctctatattgggtactacttctagtt |
1161738 |
T |
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| Q |
409 |
ctagtactaaaagcaaagcactgcatcaaagaaacccaagtctgtcttttcgattgaagagacaagt |
475 |
Q |
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| T |
1161739 |
ctagtactaaaagcaaatcactgcatcaaagaaacccaaatctgtcctttcggctaaagagacaagt |
1161805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 1128817 - 1128877
Alignment:
| Q |
317 |
cacactaccattttaaaatcctaaaaattgaagcttctagctcctaaattttgatacacaa |
377 |
Q |
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| T |
1128817 |
cacactagcattttagaatcttacatattgaagcttcttgctcctcaagtttgatacacaa |
1128877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 38026774 - 38026657
Alignment:
| Q |
9 |
acatcatcacacactctcccatgtgcaca---cttatacaaataaccatcaaatgtcatccttagcacatgctcatcaccacaaagctcccaacccaaag |
105 |
Q |
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|||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||| | |||| ||||||||||||||||||| |||||| |
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| T |
38026774 |
acatcatcacacactctcccatgtgccaacttcttatacaagtaactatcaaatgtcatcctttgaacatactcatcaccacaaagctcc---accaaag |
38026678 |
T |
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| Q |
106 |
cttccctaggcgcgttactac |
126 |
Q |
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||||||||| ||| ||||||| |
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| T |
38026677 |
cttccctagacgcattactac |
38026657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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